Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq531 158 2e-33 seq171 158 2e-33 seq243 105 8e-18 seq512 84.2 3e-11 >seq531 Length=50098 Score = 158 bits (174), Expect = 2e-33 Identities = 404/603 (67%), Gaps = 13/603 (2%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| ||||| || ||||||| ||||| || | ||| || ||||| || || | Sbjct 47735 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 47676 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||||| || ||||| || ||||| || || | | ||| |||| ||||| Sbjct 47675 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAA 47616 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGTA 33481 |||||| || || || || || | | |||||| || | | | | |||| || | Sbjct 47615 GATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGA-ATTAA 47557 Query 33482 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33541 |||| || ||||| | ||||||| | ||||| || || || || || || || | Sbjct 47556 TCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTGA 47497 Query 33542 AGAGA--TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 |||| | || | | || | |||| | ||| || ||||||| | |||||| Sbjct 47496 AGAGCCTTGCCTTATCTGCTTGGT-TCTTGAT-ATACGTGTCGATCAGGATGGAATACAT 47439 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 ||||| ||||| |||||||| || || || || || || || || | | | || | || Sbjct 47438 CTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGAT 47379 Query 33660 CTGTACTTCTGTACAA-AATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718 ||| | || || || || ||| |||| | ||| ||| |||||||| ||| |||| Sbjct 47378 CTGAATGTC-GTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTG 47320 Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTCC 33775 | ||||| |||| || || || || || | ||||| | |||| | | |||| Sbjct 47319 CGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTC-GTCGTTAAGCTTGTCTTCC 47261 Query 33776 AAT-CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834 || | || | ||||| || | ||||||||||| ||||||||||| || |||||||| Sbjct 47260 CATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCT 47201 Query 33835 TTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGA 33894 | ||| || | ||||| || || ||| | |||||| || | |||| |||| || || Sbjct 47200 TCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGGG 47141 Query 33895 TTT 33897 ||| Sbjct 47140 TTT 47138 >seq171 Length=86538 Score = 158 bits (174), Expect = 2e-33 Identities = 404/603 (67%), Gaps = 13/603 (2%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| ||||| || ||||||| ||||| || | ||| || ||||| || || | Sbjct 4749 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 4690 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||||| || ||||| || ||||| || || | | ||| |||| ||||| Sbjct 4689 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAA 4630 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGTA 33481 |||||| || || || || || | | |||||| || | | | | |||| || | Sbjct 4629 GATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGA-ATTAA 4571 Query 33482 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33541 |||| || ||||| | ||||||| | ||||| || || || || || || || | Sbjct 4570 TCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTGA 4511 Query 33542 AGAGA--TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 |||| | || | | || | |||| | ||| || ||||||| | |||||| Sbjct 4510 AGAGCCTTGCCTTATCTGCTTGGT-TCTTGAT-ATACGTGTCGATCAGGATGGAATACAT 4453 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 ||||| ||||| |||||||| || || || || || || || || | | | || | || Sbjct 4452 CTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGAT 4393 Query 33660 CTGTACTTCTGTACAA-AATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718 ||| | || || || || ||| |||| | ||| ||| |||||||| ||| |||| Sbjct 4392 CTGAATGTC-GTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTG 4334 Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTCC 33775 | ||||| |||| || || || || || | ||||| | |||| | | |||| Sbjct 4333 CGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTC-GTCGTTAAGCTTGTCTTCC 4275 Query 33776 AAT-CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834 || | || | ||||| || | ||||||||||| ||||||||||| || |||||||| Sbjct 4274 CATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCT 4215 Query 33835 TTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGA 33894 | ||| || | ||||| || || ||| | |||||| || | |||| |||| || || Sbjct 4214 TCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGGG 4155 Query 33895 TTT 33897 ||| Sbjct 4154 TTT 4152 >seq243 Length=69200 Score = 105 bits (116), Expect = 8e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 62877 ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936 |||||||| | || || || || ||||| || ||||| ||||| | || | | Sbjct 22430 ACAAACATCGGAAGGGAAATCGACGCGAGATTGCAGACGGCAACCTCGTCAGGGGATGTA 22371 Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 |||| | || |||||||| || || ||||||||||| || || ||||| | ||||| Sbjct 22370 TATTCGACGATTTCAGTGCACAGGTTGCTACACTTGATCGTGCCCAAATTCTTCTGATTG 22311 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 ||||| ||||| || ||||||||||| ||| | || ||||| ||||| ||||| || Sbjct 22310 GACTTTTCATTACATGCGTCCTTATAAAGCATGTACGGGGTACCGGTTTCTATCTGGGAC 22251 Query 63057 TCTATAAT 63064 || || || Sbjct 22250 TCGATGAT 22243 >seq512 Length=1106 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 33774 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833 ||| || || | ||||| || | ||||||||||| |||||||||||||| |||||||| Sbjct 1088 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAATGAAGCCTCTGC 1029 Query 33834 CTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGG 33893 | ||| || | ||||| || || ||| | |||||| || | |||| |||| || || Sbjct 1028 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGG 969 Query 33894 ATTT 33897 ||| Sbjct 968 GTTT 965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622941803719880