Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq254 219 1e-51 seq243 208 2e-48 >seq254 Length=68440 Score = 219 bits (242), Expect = 1e-51 Identities = 523/775 (67%), Gaps = 22/775 (3%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || || || || || | |||||||| || || | || |||||| | Sbjct 32605 TTCACACATGCGACCCCCACGCTCTACAATGCCGGCACCCCACGCCCGCAGATGAGCAGT 32546 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || || | || || ||||| ||||| ||||| | || || || |||| Sbjct 32545 TGCTTCCTGCTGGCGCTCAAAGATGATTCGATCGAAGGTATTTACGATACGCTCAAGACA 32486 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGT- 363723 ||||| || || || ||||| || || ||||| || || | ||||| |||| Sbjct 32485 TGTGCGCTCATCTCGAAGAACAGTGGTGGCATTGGCTTGCATG--TTCACAACATTCGAA 32428 Query 363724 GCACAGAACAGTTACATTCGCGGCACAG--GGGGATACTCGAATGGGCTGGTTCCCATGC 363781 || | | | || ||||||||||| ||| |||| | | ||||| | || ||||||| Sbjct 32427 GCTCTGGA-AGCTACATTCGCGGGACAAATGGGGTCAGT--AATGGAATAGTCCCCATGC 32371 Query 363782 TTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGG 363841 | || || || || | ||||| | ||||||||||| || || |||||||||||||| Sbjct 32370 TGCGAGTCTTCAACGACACTGCCCGCTACGTCGACCAAGGAGGTGGAAAGCGCAAAGGCA 32311 Query 363842 CGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGA 363901 ||||| || || || ||||| || || |||||| | || ||| | | || || Sbjct 32310 GCTTTGCCATCTACCTTGAGCCGTGGCACGCTGATATTATGGATTTTTTGAACCTGAAGA 32251 Query 363902 AAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTG 363961 | ||||| || || ||||| | || || | || || ||||| | || ||| | | | Sbjct 32250 AGAACACCGGCAAGGAGGAGATTCGGGCGAGAGACCTCTTCTACGGTCTCTGGATCCCCG 32191 Query 363962 ACCATTTTATGAAGCGCGTGGAGGCAGGTAAG---AATTGGTCACTCTTTTGCCCACACG 364018 ||| || |||||||| ||| || | ||| || ||| |||| ||| | | || Sbjct 32190 ACCTCTTCATGAAGCGAGTGCAGCGA---AAGGCCAAATGGACACT-TTTCGATCCCAAA 32135 Query 364019 AATGTCCA-GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTAT 364077 | | || || || ||||| ||||| | || | | ||| || || |||| Sbjct 32134 ACAGCCCCTGGGCTCGCCGATTGCTGGGGCGCTGAATTCGAGAGTCTCTATGAGCAGTAC 32075 Query 364078 GAATCGGAGGG-AAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCAT 364136 || ||| ||||| | ||||| || |||||| | || ||||| |||||||| Sbjct 32074 GAGAAGGATAATAAAGGGTAC-AAGACGATGGACGCACAAGATCTCTGGTTCGCCATCAT 32016 Query 364137 GGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAA 364196 || ||||||| ||||| ||||| || ||| || | ||||||||| | ||||||||||| Sbjct 32015 TGAAGCGCAGATCGAGACGGGAACGCCGTATTTGCTATACAAAGATGCATGCAACCGCAA 31956 Query 364197 GTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTG 364255 ||| |||||||| ||||||| || | ||| | | || || || || ||||| || | Sbjct 31955 GTCGAACCAGCAAAACCTTGGAACCA-TCAAATGCTCAAATCTGTGCACGGAGATCATCG 31897 Query 364256 AATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 | |||||||| || || || ||||| || ||||| || || ||||||| || Sbjct 31896 AGTACACCGCACCGGATGAAGTCGCCGTGTGCAACCTCGCCTCCCTCGCGCTCCC 31842 >seq243 Length=69200 Score = 208 bits (230), Expect = 2e-48 Identities = 917/1423 (64%), Gaps = 75/1423 (5%) Strand=Plus/Plus Query 363763 AATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGT 363822 |||||||| ||||| ||||||||||| || | |||| || | || || ||||| ||| Sbjct 21874 AATGGGCTTGTTCCAATGCTTCGTGTTTTCAATGATACGGCACGATATGTTGACCAAGGT 21933 Query 363823 GGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTT 363882 || || || | ||||| || ||||| || ||| | || || ||||| |||||||| Sbjct 21934 GGTGGCAAAAGAAAAGGTGCATTTGCAATCTATGTAGAACCCTGGCATGCAGATATTTTC 21993 Query 363883 GAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTC 363942 || ||||| |||| | |||||| || ||||| ||| |||| || |||||||| || Sbjct 21994 GAATTTCTCACGCTCAAGCGAAACACCGGGAAAGAAGAAATGCGCGCTCGTGATCTCTTT 22053 Query 363943 TATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG---GAGGCAGGTAAGAATTGG 363999 |||| ||| ||| || | || ||||||||||| ||| | |||| ||| ||| Sbjct 22054 TATGGACTCTGGATTCCAGATTTGTTTATGAAGCGTGTGCAAAAATCAGG---GAACTGG 22110 Query 364000 TCACTCTTTTGCCCACACGAATG-TCCAGGTCTTTCCGA-TG-TATGGGGTGACGACTAT 364056 |||| ||| | || | | || |||||| || | || || ||| || || || | | Sbjct 22111 ACACT-TTTCGACCCTAATATTGCTCCAGGCCTCGCTGACTGCTAT--GGAGAAGAGTTT 22167 Query 364057 GTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAG 364116 | ||||||| | |||||| || || | || || ||| | | || || Sbjct 22168 GAAAAATTATACGAGCAATATGAACGTGAAGGCAGGGGAACGAAAACAGTCACGGCGCAA 22227 Query 364117 AAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTAC 364176 |||| ||||| ||||| || || ||||| || || || || || || ||| | || Sbjct 22228 GAGCTCTGGTTCCAAATCATCGAGTCCCAGATAGAAACCGGTACCCCGTACATGCTTTAT 22287 Query 364177 AAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAAC 364236 || || | || || |||||||| ||| || | | || || || || |||||| Sbjct 22288 AAGGACGCATGTAATGAAAAGTCCAATCAGAAGAATTTGGGCACGATCAAGTGTAGCAAC 22347 Query 364237 CTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCG 364296 || || || || || | ||||| || | || |||||| |||||| || || || ||| Sbjct 22348 CTGTGCACTGAAATCGTCGAATATACATCCCCTGACGAGGTTGCCGTCTGCAATCTCGCG 22407 Query 364297 TCGATCGCGCTTCCGGCGTTTGT------------AAAAGATGGTA----CTTTT--GAC 364338 ||||| | |||||| |||||| | ||||||| | ||||| ||| Sbjct 22408 TCGATTTCCCTTCCGATGTTTGTCAAGAAAAACGAAGAAGATGGAAGCCTCTTTTTCGAC 22467 Query 364339 CACCAGCATCTTTA-TGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGA 364397 | ||| || | | || | | | |||| ||| ||| || || || Sbjct 22468 TTTGA-CATGTTGAGATATGTTTCGCAGGTCGTCACTTTTGGTCTGAACAGAGTCATTGA 22526 Query 364398 CAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGG 364457 | ||| ||||||||| |||| || || || ||| |||||| ||||| || || || Sbjct 22527 CGCGAACTATTATCCAGTTCCCGAGGCAAAGTATTCCAATATGAAGCATCGACCCATCGG 22586 Query 364458 TCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATT--TGA-TTC 364514 | || || || || ||||| ||| || || | || || || | || || | Sbjct 22587 AATCGGCGTTCAAGGTCTCGCAGACACATTCTTGCTTCTGAAAATTCCGTTCACGAGTGA 22646 Query 364515 GCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATG-- 364572 | ||| ||| | | | | || | || |||||||||||||| || |||| ||| || Sbjct 22647 GACTG-CGC-AGCGAT-TGAACGAAGACATCTTTGAAACAATATACTTTGGCGCTTTGGA 22703 Query 364573 --ACTGCTTCGTGTGATTTGGCAAAAA-------CCAAGGGAAAGTACTCTACTTATGAG 364623 | ||| || | ||| || | ||| ||||| ||| | | Sbjct 22704 GAAGAGCTGCGAG---CTTGCGAAGCAGTCCGGTCCATATGAAAG----CTA--TGCCAA 22754 Query 364624 GGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCC---ATCT 364680 |||| | ||| ||| |||| |||||||| || ||||| |||| ||| | Sbjct 22755 CAGTCCGTTGAGTCG--TGGAGAATTGCAGTTTGACCTCTGGAAGGTCAAGCCGAAGAGT 22812 Query 364681 GTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCC 364740 | |||||| | |||||| | || || || | || |||| | ||||||||| Sbjct 22813 GGGCGATGGGATTGGGATGCACTGAAGAAGAATATTCTGGAGAATGGAGCACGCAACTCC 22872 Query 364741 CTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGC 364800 ||| | ||||||||||| || || || || |||| || |||||||| ||||| ||| Sbjct 22873 CTCCTCCTCGCGCCCATGCCTACTGCGTCGACATCACAAATTCTCGGAAATAACGAATGC 22932 Query 364801 TTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTA 364860 | || || ||||| || |||| ||||| || ||||| |||||||| || | Sbjct 22933 ATTGAGCCCTTTACCTCGAACATTTACCTCCGCCGTGTGCTTTCTGGAGAATTCCCCATT 22992 Query 364861 GTTAATAAGTACCTAGTCAAGGATCT-TTCCGACCGCGGGCTGTGGGGTGACAGCATGAA 364919 || || |||||||| ||||||||| | | ||| | || || ||| || | || Sbjct 22993 GTGAACAAGTACCTTGTCAAGGATATGGTTCGA-CTTGGTCTTTGGAACGAAAAAGTGCG 23051 Query 364920 GAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGAT-TTCCAGAAGATC 364978 ||| | || ||||||| ||||||| || || ||| || | || ||||| ||| Sbjct 23052 CAACCAGATTATCGCCGATAATGGTAGCGTTCAAAAC-TTGAATAATCTTCCAACAGAGT 23110 Query 364979 TGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAA---CTCTCATTGATATGG 365035 ||| || |||| |||||| ||||| || || || || || || |||||| Sbjct 23111 ATAAGGAGATATACAGAACCGTCTGGGAGAT---CAAGCAAAAAGACCTTATCAATATGG 23167 Query 365036 CGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCAT-GACTCAG 365094 | | || || ||||| | ||| || ||||| || | || | || | || | Sbjct 23168 CCGTCGCGCGTGGTGCATACATCGACCAAAGCCAATCCCTGAATCTCTTTTTAGAAGC-C 23226 Query 365095 CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGA 365137 ||||| | || |||| || |||||||| ||||||| ||||| Sbjct 23227 CCAACAACTGCGCAGCTCACGTCCATGCACTTCTACGCGTGGA 23269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303342027441926