Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq295 96.9 2e-15 seq213 96.9 2e-15 seq181 96.9 2e-15 seq95 96.9 2e-15 seq94 96.9 2e-15 seq376 91.5 1e-13 seq122 91.5 1e-13 seq65 91.5 1e-13 >seq295 Length=62094 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||||| | Sbjct 41847 CTCTCTCTCCAAAGTGCTTTTCATCTTTCGCTCACGCTACTTGTTCGCTATCGGTCTCCC 41788 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 41787 CATGATATTTAGCCTT 41772 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/97 (81%), Gaps = 7/97 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTG--GCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTC 25954 ||| ||||||||||| || || | |||||||||| |||| ||||| || |||||| Sbjct 43518 AAGACCGTTCCCTTGACGCAGTTGGTTCGCTAGATGGTAGCTAGGGACAGTGGGAATCTC 43459 Query 25955 GTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||| |||||||||||| ||||||||| ||||| Sbjct 43458 ATTAATCCATTCATGCGCGTCTCTAATTAGAAGACGA 43422 >seq213 Length=77040 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||||| | Sbjct 76551 CTCTCTCTCCAAAGTGCTTTTCATCTTTCGCTCACGCTACTTGTTCGCTATCGGTCTCCC 76492 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 76491 CATGATATTTAGCCTT 76476 >seq181 Length=22678 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||||| | Sbjct 22612 CTCTCTCTCCAAAGTGCTTTTCATCTTTCGCTCACGCTACTTGTTCGCTATCGGTCTCCC 22553 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 22552 CATGATATTTAGCCTT 22537 >seq95 Length=35521 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||||| | Sbjct 35469 CTCTCTCTCCAAAGTGCTTTTCATCTTTCGCTCACGCTACTTGTTCGCTATCGGTCTCCC 35410 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 35409 CATGATATTTAGCCTT 35394 >seq94 Length=35646 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||||| | Sbjct 44 CTCTCTCTCCAAAGTGCTTTTCATCTTTCGCTCACGCTACTTGTTCGCTATCGGTCTCCC 103 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 104 CATGATATTTAGCCTT 119 >seq376 Length=54760 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/97 (81%), Gaps = 7/97 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTG--GCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTC 25954 ||| ||||||||||| || || | |||||||||| |||| ||||| || |||||| Sbjct 1387 AAGACCGTTCCCTTGACGCAGTTGGTTCGCTAGATGGTAGCTAGGGACAGTGGGAATCTC 1328 Query 25955 GTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||| |||||||||||| ||||||||| ||||| Sbjct 1327 ATTAATCCATTCATGCGCGTCTCTAATTAGAAGACGA 1291 >seq122 Length=470851 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/97 (81%), Gaps = 7/97 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTG--GCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTC 25954 ||| ||||||||||| || || | |||||||||| |||| ||||| || |||||| Sbjct 1387 AAGACCGTTCCCTTGACGCAGTTGGTTCGCTAGATGGTAGCTAGGGACAGTGGGAATCTC 1328 Query 25955 GTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||| |||||||||||| ||||||||| ||||| Sbjct 1327 ATTAATCCATTCATGCGCGTCTCTAATTAGAAGACGA 1291 >seq65 Length=9442 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/97 (81%), Gaps = 7/97 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTG--GCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTC 25954 ||| ||||||||||| || || | |||||||||| |||| ||||| || |||||| Sbjct 452 AAGACCGTTCCCTTGACGCAGTTGGTTCGCTAGATGGTAGCTAGGGACAGTGGGAATCTC 393 Query 25955 GTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||| |||||||||||| ||||||||| ||||| Sbjct 392 ATTAATCCATTCATGCGCGTCTCTAATTAGAAGACGA 356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944371056883