Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq531 156 5e-33 seq171 156 5e-33 seq243 104 3e-17 seq512 93.3 5e-14 >seq531 Length=50098 Score = 156 bits (172), Expect = 5e-33 Identities = 416/621 (67%), Gaps = 15/621 (2%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| ||||| || ||||| | ||||| || | ||| | ||||| || || | Sbjct 47735 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 47676 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 32778 || ||||||| || ||||| || ||||| || || | | || || |||| |||| Sbjct 47675 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTG-CACAGAAACTTCCACTGAAGA 47617 Query 32779 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGT 32837 | ||||| || || || || || | | |||||| || | | | | |||| || Sbjct 47616 AGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGA-ATTA 47558 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 ||||| || ||||| | ||||||| | ||||| || || ||||| ||||| || Sbjct 47557 ATCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTG 47498 Query 32898 AAGAGA--TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 32955 ||||| | || | | || | |||| | ||| || || |||| | ||||| Sbjct 47497 AAGAGCCTTGCCTTATCTGCTTGGT-TCTTGAT-ATACGTGTCGATCAGGATGGAATACA 47440 Query 32956 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAA 33015 | ||||| ||||| |||||||| || ||||| || || || ||||| | | | || | | Sbjct 47439 TCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGA 47380 Query 33016 TCTGTACTTCTGTACAA-AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 33074 |||| | || || || || ||| | || | ||| ||| |||||||| ||| ||| Sbjct 47379 TCTGAATGTC-GTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCT 47321 Query 33075 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTC 33131 || ||||| |||| || || || || || | ||||| | |||| | | ||| Sbjct 47320 GCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTC-GTCGTTAAGCTTGTCTTC 47262 Query 33132 CAAT-CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190 | || | || | ||||| || | || |||||||| ||||||||||| || |||||||| Sbjct 47261 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGC 47202 Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 33250 | ||| || | ||||| || || |||| | |||||||| | |||| |||| || || Sbjct 47201 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGG 47142 Query 33251 ATTTTTTGCAAGGATTGGTTC 33271 |||| | ||| ||||| || Sbjct 47141 GTTTTCTTGAAGCATTGGCTC 47121 >seq171 Length=86538 Score = 156 bits (172), Expect = 5e-33 Identities = 416/621 (67%), Gaps = 15/621 (2%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| ||||| || ||||| | ||||| || | ||| | ||||| || || | Sbjct 4749 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 4690 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 32778 || ||||||| || ||||| || ||||| || || | | || || |||| |||| Sbjct 4689 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTG-CACAGAAACTTCCACTGAAGA 4631 Query 32779 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGT 32837 | ||||| || || || || || | | |||||| || | | | | |||| || Sbjct 4630 AGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGA-ATTA 4572 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 ||||| || ||||| | ||||||| | ||||| || || ||||| ||||| || Sbjct 4571 ATCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTG 4512 Query 32898 AAGAGA--TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 32955 ||||| | || | | || | |||| | ||| || || |||| | ||||| Sbjct 4511 AAGAGCCTTGCCTTATCTGCTTGGT-TCTTGAT-ATACGTGTCGATCAGGATGGAATACA 4454 Query 32956 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAA 33015 | ||||| ||||| |||||||| || ||||| || || || ||||| | | | || | | Sbjct 4453 TCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGA 4394 Query 33016 TCTGTACTTCTGTACAA-AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 33074 |||| | || || || || ||| | || | ||| ||| |||||||| ||| ||| Sbjct 4393 TCTGAATGTC-GTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCT 4335 Query 33075 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTC 33131 || ||||| |||| || || || || || | ||||| | |||| | | ||| Sbjct 4334 GCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTC-GTCGTTAAGCTTGTCTTC 4276 Query 33132 CAAT-CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190 | || | || | ||||| || | || |||||||| ||||||||||| || |||||||| Sbjct 4275 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGC 4216 Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 33250 | ||| || | ||||| || || |||| | |||||||| | |||| |||| || || Sbjct 4215 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGG 4156 Query 33251 ATTTTTTGCAAGGATTGGTTC 33271 |||| | ||| ||||| || Sbjct 4155 GTTTTCTTGAAGCATTGGCTC 4135 >seq243 Length=69200 Score = 104 bits (114), Expect = 3e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62812 || || ||||| || ||||| ||||| | || | ||||| | || |||||||| Sbjct 22409 GACGCGAGATTGCAGACGGCAACCTCGTCAGGGGATGTATATTCGACGATTTCAGTGCAC 22350 Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872 || || ||||||||||| || || ||||| | ||||| ||||| ||||| || ||| Sbjct 22349 AGGTTGCTACACTTGATCGTGCCCAAATTCTTCTGATTGGACTTTTCATTACATGCGTCC 22290 Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 62919 |||||||| ||| | || ||||| ||||| ||||| || || || || Sbjct 22289 TTATAAAGCATGTACGGGGTACCGGTTTCTATCTGGGACTCGATGAT 22243 >seq512 Length=1106 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 33131 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190 ||| || || | ||||| || | || |||||||| |||||||||||||| |||||||| Sbjct 1088 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAATGAAGCCTCTGC 1029 Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 33250 | ||| || | ||||| || || |||| | |||||||| | |||| |||| || || Sbjct 1028 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGG 969 Query 33251 ATTTTTTGCAAGGATTGGTTC 33271 |||| | ||| ||||| || Sbjct 968 GTTTTCTTGAAGCATTGGCTC 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633626511162800