Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq531 215 6e-51 seq171 215 6e-51 >seq531 Length=50098 Score = 215 bits (238), Expect = 6e-51 Identities = 416/612 (68%), Gaps = 24/612 (4%) Strand=Plus/Minus Query 93107 TGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCT 93166 || || || || || || || || | ||| || ||||| ||||||||||| | | |||| Sbjct 47719 TGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAAACCTGGCATTAATCCT 47660 Query 93167 CGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCT 93226 || ||||||||||| || |||| | ||||| ||| || || || || ||||| ||| Sbjct 47659 CGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAAGATTCCCTCCACAGCT 47600 Query 93227 GCAAATGCCACAATACGTTCGGCAAAA---TTTGCGGAATTACTGCTGATCCATTTTAAA 93283 || || | |||| | |||||| || | ||| |||||| |||||||| | Sbjct 47599 GCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGAATTA------ATCCATTTAATT 47546 Query 93284 GCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG------ 93337 ||||| | || || | || || ||| || | || || |||||||| || || Sbjct 47545 GCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTGAAGAGCCTTGCC 47486 Query 93338 TAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAA 93397 | |||| | || ||| | || || || ||||| | | |||||||| || || Sbjct 47485 TTATCTGCTTGGT-----TCTTG-ATATACGTGTCGATCAGGATGGAATACATCTCCGAG 47432 Query 93398 TGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACT 93457 || | ||| || || || |||||||| || || || || | | |||| | |||||| | Sbjct 47431 TGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGATCTGAATG 47372 Query 93458 TCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaa 93517 || | || | | | ||||| ||| |||||| ||||| |||||||| ||||| Sbjct 47371 TCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTGCGAAAAAT 47312 Query 93518 GCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATC---CCAATCGGAT 93574 |||| | ||||| || || || ||| || || |||||||| || ||| || Sbjct 47311 GCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTGTCTTCCCATTCTTTA 47252 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 | ||||| ||||| || |||||||| || ||||||||||| || ||||||| |||||| Sbjct 47251 ACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCTTCTTTGTAT 47192 Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTT 93694 | | ||| || || |||| | |||||||| | ||| | | || ||||| |||| Sbjct 47191 TTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGGGTTTTCTTGA 47132 Query 93695 AGTAACGGCTCT 93706 || | |||||| Sbjct 47131 AGCATTGGCTCT 47120 >seq171 Length=86538 Score = 215 bits (238), Expect = 6e-51 Identities = 416/612 (68%), Gaps = 24/612 (4%) Strand=Plus/Minus Query 93107 TGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCT 93166 || || || || || || || || | ||| || ||||| ||||||||||| | | |||| Sbjct 4733 TGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAAACCTGGCATTAATCCT 4674 Query 93167 CGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCT 93226 || ||||||||||| || |||| | ||||| ||| || || || || ||||| ||| Sbjct 4673 CGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAAGATTCCCTCCACAGCT 4614 Query 93227 GCAAATGCCACAATACGTTCGGCAAAA---TTTGCGGAATTACTGCTGATCCATTTTAAA 93283 || || | |||| | |||||| || | ||| |||||| |||||||| | Sbjct 4613 GCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGAATTA------ATCCATTTAATT 4560 Query 93284 GCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG------ 93337 ||||| | || || | || || ||| || | || || |||||||| || || Sbjct 4559 GCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTGAAGAGCCTTGCC 4500 Query 93338 TAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAA 93397 | |||| | || ||| | || || || ||||| | | |||||||| || || Sbjct 4499 TTATCTGCTTGGT-----TCTTG-ATATACGTGTCGATCAGGATGGAATACATCTCCGAG 4446 Query 93398 TGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACT 93457 || | ||| || || || |||||||| || || || || | | |||| | |||||| | Sbjct 4445 TGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGATCTGAATG 4386 Query 93458 TCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaa 93517 || | || | | | ||||| ||| |||||| ||||| |||||||| ||||| Sbjct 4385 TCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTGCGAAAAAT 4326 Query 93518 GCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATC---CCAATCGGAT 93574 |||| | ||||| || || || ||| || || |||||||| || ||| || Sbjct 4325 GCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTGTCTTCCCATTCTTTA 4266 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 | ||||| ||||| || |||||||| || ||||||||||| || ||||||| |||||| Sbjct 4265 ACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCTTCTTTGTAT 4206 Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTT 93694 | | ||| || || |||| | |||||||| | ||| | | || ||||| |||| Sbjct 4205 TTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGGGTTTTCTTGA 4146 Query 93695 AGTAACGGCTCT 93706 || | |||||| Sbjct 4145 AGCATTGGCTCT 4134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556855976193320