Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 143 2e-29 seq243 82.4 6e-11 >seq2 Length=132159 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || |||||||| || ||||| || |||| ||||| |||||| | | | Sbjct 77757 ATGCAGATCTTCGTCAAAACTTTGACTGGTAAGACCATCACCCTTGAGGTGGAAGCAAAC 77816 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | ||||| |||| ||||||||||||| || || ||||| || || Sbjct 77817 GATACCATTGAAAACATCAAGGCAAAAGTTCAAGACAAGGAAGGAATCCCACCAGACCAG 77876 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| || ||| | |||||| ||||| | || || |||||| Sbjct 77877 CAGCGACTCATTTTCGCCGGAAAGCAGCTCGAGGATGGGCGCACGCTGTCAGACTACAAC 77936 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| |||||| |||| | || | ||| |||| |||| || || Sbjct 77937 ATTCAGAAAGAAAGCACCCTTCACCTCGTTCTGCGGCTGCGTGGTGG 77983 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || |||||| | || || || || |||| || || |||||| | | | Sbjct 77985 ATGCAGATCTTCGTCAAAACTCTGACTGGCAAGACTATCACACTCGAGGTGGAAGCAAAC 78044 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | ||||| |||| ||||||||||||| || || ||||| || || Sbjct 78045 GATACCATTGAAAACATCAAGGCAAAAGTTCAAGACAAGGAAGGAATCCCACCAGACCAG 78104 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| || ||| | |||||| ||||| | || || |||||| Sbjct 78105 CAGCGACTCATTTTCGCCGGAAAGCAGCTCGAGGATGGGCGCACGCTGTCAGACTACAAC 78164 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| |||||| |||| | || | ||| | || |||| ||||| Sbjct 78165 ATTCAGAAAGAAAGCACCCTTCACCTCGTTCTTCGGCTGCGAGGAGG 78211 >seq243 Length=69200 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/156 (72%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 129695 AAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGG 129754 ||||||| || | ||||||||||||| |||| | | || ||||| ||||| | Sbjct 22414 AAATCGACGCGAGATTGCAGACGGCAACCTCGTCAGGGGATGTATATTCGACGATTTCAG 22355 Query 129755 CGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATT--ACTTTTCATGTTGCA 129812 ||||| || ||| || || |||||||||| ||| ||||| |||||||| || || Sbjct 22354 TGCACAGGTTGCTACACTTGATCGTGCCCAAATTCTTCTGATTGGACTTTTCA--TTACA 22297 Query 129813 AGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 || || || || | ||||||||| || || ||||| Sbjct 22296 TGCGTCCTTATAAAGCATGTACGGGGTACCGGTTTC 22261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419724455003545