Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq577 104 5e-17 seq243 104 5e-17 seq264 95.1 2e-14 seq217 95.1 2e-14 seq122 86.0 1e-11 seq75 84.2 4e-11 >seq577 Length=48512 Score = 104 bits (114), Expect = 5e-17 Identities = 230/340 (68%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTC--TTTTC--TCGCGGTATGATGTGGAGCGTTCTAT 218573 ||||||||||| ||||||||||| | ||||| |||||| || || || || || Sbjct 33024 GACTTCATCGATAAGGAGCTCATACAGTTTTCCATCGCGGACTG----TGAACGATCGAT 32969 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 ||| |||||||| || ||||||| |||||| ||||| | || | || || Sbjct 32968 CCCCTCTGTGGTGGACGGATTCAAGCCGGGGCAGCGAAAGATTATGTTCTCATGCTTTAA 32909 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| || || | | || |||||||| ||| | | || ||||| ||||| | Sbjct 32908 GCGAAATCTCATAAAGTCCATCAAGGTCGCACAGCTCACAGGGTATGTCTCCGAGCACGC 32849 Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753 | ||||||||| || |||||| ||||| |||| | ||| |||| || |||| Sbjct 32848 CGCCTACCATCATGGCGAGCAGTCGCTGCAATCAACCATAATCGGCCTGGCGCAAGACTT 32789 Query 218754 TGTGGGCAGTAACAACAT-GAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTAT 218812 ||| || || || || |||| || ||||| | || ||||||||| | || | Sbjct 32788 TGTCGGATCGAATAATATACCACTT-CTCGTCCCCGATGGGCAGTTTGGTACGCGATTGC 32730 Query 218813 TGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTAC 218852 ||| || || |||||||| |||||| | || || ||||| Sbjct 32729 AGGGAGGGAAAGATAGTGCGTCTGCCCGTTACATTTTTAC 32690 >seq243 Length=69200 Score = 104 bits (114), Expect = 5e-17 Identities = 230/340 (68%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTC--TTTTC--TCGCGGTATGATGTGGAGCGTTCTAT 218573 ||||||||||| ||||||||||| | ||||| |||||| || || || || || Sbjct 1847 GACTTCATCGATAAGGAGCTCATACAGTTTTCCATCGCGGACTG----TGAACGATCGAT 1792 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 ||| |||||||| || ||||||| |||||| ||||| | || | || || Sbjct 1791 CCCCTCTGTGGTGGACGGATTCAAGCCGGGGCAGCGAAAGATTATGTTCTCATGCTTTAA 1732 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| || || | | || |||||||| ||| | | || ||||| ||||| | Sbjct 1731 GCGAAATCTCATAAAGTCCATCAAGGTCGCACAGCTCACAGGGTATGTCTCCGAGCACGC 1672 Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753 | ||||||||| || |||||| ||||| |||| | ||| |||| || |||| Sbjct 1671 CGCCTACCATCATGGCGAGCAGTCGCTGCAATCAACCATAATCGGCCTGGCGCAAGACTT 1612 Query 218754 TGTGGGCAGTAACAACAT-GAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTAT 218812 ||| || || || || |||| || ||||| | || ||||||||| | || | Sbjct 1611 TGTCGGATCGAATAATATACCACTT-CTCGTCCCCGATGGGCAGTTTGGTACGCGATTGC 1553 Query 218813 TGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTAC 218852 ||| || || |||||||| |||||| | || || ||||| Sbjct 1552 AGGGAGGGAAAGATAGTGCGTCTGCCCGTTACATTTTTAC 1513 >seq264 Length=67153 Score = 95.1 bits (104), Expect = 2e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| | Sbjct 7784 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGTGGGTTCGACC 7725 Query 142564 CCCAC 142568 ||||| Sbjct 7724 CCCAC 7720 >seq217 Length=74636 Score = 95.1 bits (104), Expect = 2e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| | Sbjct 24703 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGTGGGTTCGACC 24644 Query 142564 CCCAC 142568 ||||| Sbjct 24643 CCCAC 24639 >seq122 Length=470851 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||| || ||||||| ||||| ||||||| |||| ||||||||||| Sbjct 158129 AGCCCGTTTAGCTCAGT-GGAAGAGCGCCAGACTTTTAATCTGGTGGCCGTGGGTTCGAC 158071 Query 142563 CCCCACATCGGG 142574 ||||||| |||| Sbjct 158070 CCCCACAGCGGG 158059 >seq75 Length=125691 Score = 84.2 bits (92), Expect = 4e-11 Identities = 62/71 (87%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||| || ||||||| ||||| ||||||| |||| ||||||||||| | Sbjct 55679 GCCCGTTTAGCTCAGT-GGAAGAGCGCCAGACTTTTAATCTGGTGGCCGTGGGTTCGACC 55737 Query 142564 CCCACATCGGG 142574 |||||| |||| Sbjct 55738 CCCACAGCGGG 55748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027827673772813