Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 152 9e-32 seq577 91.5 3e-13 seq243 91.5 3e-13 >seq2 Length=132159 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | ||| || ||| ||||| || ||||| || || || Sbjct 77983 CCACCACGCAGCCGCAGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGAC 77924 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||| || | |||||| |||||||| ||||||| || ||||| ||||| Sbjct 77923 AGCGTGCGCCCATCCTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGG 77864 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||| |||||||||| | || ||||| || || ||| || Sbjct 77863 ATTCCTTCCTTGTCTTGAACTTTTGCCTTGATGTTTTCAATGGTATCGTTTGCTTCCACC 77804 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || | || |||||||| |||||||| Sbjct 77803 TCAAGGGTGATGGTCTTACCAGTCAAAGTTTTGACGAAGATCTGCAT 77757 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | || | ||| || ||| ||||| || ||||| || || || Sbjct 78211 CCTCCTCGCAGCCGAAGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGAC 78152 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||| || | |||||| |||||||| ||||||| || ||||| ||||| Sbjct 78151 AGCGTGCGCCCATCCTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGG 78092 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||| |||||||||| | || ||||| || || ||| || Sbjct 78091 ATTCCTTCCTTGTCTTGAACTTTTGCCTTGATGTTTTCAATGGTATCGTTTGCTTCCACC 78032 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || || || || |||||||| |||||||| Sbjct 78031 TCGAGTGTGATAGTCTTGCCAGTCAGAGTTTTGACGAAGATCTGCAT 77985 >seq577 Length=48512 Score = 91.5 bits (100), Expect = 3e-13 Identities = 201/298 (67%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 176235 AGTTGTGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCG 176294 ||| | || || || || | ||||||||||| || || ||||| || | || | ||| Sbjct 32684 AGTCGAGTAAAAATGTAACGGGCAGACGCACTATCTTTCCCTCCCTGCAATCGCGTACCA 32743 Query 176295 AATTGTCC-GCGAGGAAGAAGCAAATTG-ATGTTATTCGAACCCACGTAGTCTTGGGCCA 176352 || || || || ||| || || | | || |||||||| || || ||||||| |||| Sbjct 32744 AACTGCCCATCGGGGACGA--GAAGTGGTATATTATTCGATCCGACAAAGTCTTGCGCCA 32801 Query 176353 TTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTG 176412 |||| ||||| || || ||| |||||| || || ||| |||||| ||| Sbjct 32802 GGCCGATTATGGTTGATTGCAGCGACTGCTCGCCATGATGGTAGGCGGCGTGCTCGGAGA 32861 Query 176413 TGTATCCGGCAAACTGCGCGACTTTGATTTCTTGTACGAGGTTGCGCTTCAACGCCGAGA 176472 || || | | ||| ||||| ||||| | || ||| || ||||| || |||| Sbjct 32862 CATACCCTGTGAGCTGTGCGACCTTGATGGACTTTATGAGATTTCGCTTAAAGCATGAGA 32921 Query 176473 ACAGAATCTTCCGCTGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACGCTC 176530 ||| |||||| |||||| ||||| | || || || || || || || || || || Sbjct 32922 ACATAATCTTTCGCTGCCCCGGCTTGAATCCGTCCACCACAGAGGGGATCGATCGTTC 32979 >seq243 Length=69200 Score = 91.5 bits (100), Expect = 3e-13 Identities = 201/298 (67%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 176235 AGTTGTGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCG 176294 ||| | || || || || | ||||||||||| || || ||||| || | || | ||| Sbjct 1507 AGTCGAGTAAAAATGTAACGGGCAGACGCACTATCTTTCCCTCCCTGCAATCGCGTACCA 1566 Query 176295 AATTGTCC-GCGAGGAAGAAGCAAATTG-ATGTTATTCGAACCCACGTAGTCTTGGGCCA 176352 || || || || ||| || || | | || |||||||| || || ||||||| |||| Sbjct 1567 AACTGCCCATCGGGGACGA--GAAGTGGTATATTATTCGATCCGACAAAGTCTTGCGCCA 1624 Query 176353 TTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTG 176412 |||| ||||| || || ||| |||||| || || ||| |||||| ||| Sbjct 1625 GGCCGATTATGGTTGATTGCAGCGACTGCTCGCCATGATGGTAGGCGGCGTGCTCGGAGA 1684 Query 176413 TGTATCCGGCAAACTGCGCGACTTTGATTTCTTGTACGAGGTTGCGCTTCAACGCCGAGA 176472 || || | | ||| ||||| ||||| | || ||| || ||||| || |||| Sbjct 1685 CATACCCTGTGAGCTGTGCGACCTTGATGGACTTTATGAGATTTCGCTTAAAGCATGAGA 1744 Query 176473 ACAGAATCTTCCGCTGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACGCTC 176530 ||| |||||| |||||| ||||| | || || || || || || || || || || Sbjct 1745 ACATAATCTTTCGCTGCCCCGGCTTGAATCCGTCCACCACAGAGGGGATCGATCGTTC 1802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921614416445960