Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-16 >seq2 Length=132159 Score = 100 bits (110), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 114191 TTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTA 114250 |||||| ||||||||||| || || || || ||| || || || || || ||| | Sbjct 78176 TTCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCCTCGAGCTGCTTTCCGGCGAA 78117 Query 114251 GATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT-AGCT 114309 ||||| ||||| ||||| || || || ||||| ||||| || |||||| || | | Sbjct 78116 AATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAA-CTTTTGCCTTGATGT 78058 Query 114310 GTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 114369 ||||| ||| ||| | | ||| || || | || | || ||||| ||||||||||| | Sbjct 78057 TTTCAATGGTATCGTTTGCTTCCACCTCGAGTGTGATAGTCTTGCCAGTCAGAGTTTTGA 77998 Query 114370 CAAAAATCTGCATG 114383 | || ||||||||| Sbjct 77997 CGAAGATCTGCATG 77984 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || ||| | || | || |||||| ||||||||||| || Sbjct 77986 ATGCCACCACGCAGCCGCAGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCT 77927 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || || || || || ||| | ||||| ||||| ||||| || Sbjct 77926 GACAGCGTGCGCCCATCCTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGT 77867 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTG-TTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 || || ||||| ||||| || |||||| || | | ||||| ||| ||| | | ||| Sbjct 77866 GGGATTCCTTCCTTGTCTTGAA-CTTTTGCCTTGATGTTTTCAATGGTATCGTTTGCTTC 77808 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 114385 || || | ||| | || || || |||| |||||| || || |||||||| || Sbjct 77807 CACCTCAAGGGTGATGGTCTTACCAGTCAAAGTTTTGACGAAGATCTGCATAGC 77754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420130851571116