Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq577 96.9 8e-15 seq243 96.9 8e-15 >seq577 Length=48512 Score = 96.9 bits (106), Expect = 8e-15 Identities = 364/553 (66%), Gaps = 16/553 (3%) Strand=Plus/Plus Query 297227 CGCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCG 297286 ||||||| ||| || | || || ||| ||||| | |||||||| || | | || Sbjct 32480 CGCTTCAAGTTCTCGATGACATCCCAGGGACTGTAATTGGGGATATTCGTGGCGAATCCA 32539 Query 297287 GTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCT 297346 || || || || || ||| ||||| || | |||| || || || || || || | Sbjct 32540 GTGCCAATGCCGGCCGTACCGTTCACAAGGACCATCGGTATGACTGGGACGTAGTAATGG 32599 Query 297347 GGTTCGATCTTGTCA-CCGTCATCATACAGATATTTCAGAAGATTATCGTCCGTATCGAC 297405 || |||| || | | |||||||||| | ||| | || | | ||| || | || | Sbjct 32600 GGCTCGA-CTGGAAATCCGTCATCATCCTTATAGTCCAATACCTCATCATCTTCA-CGGC 32657 Query 297406 GA-AAACCTGTCGAGTCTGAGGGTTC--AGTTTTGTGAAAATATATCGTGCACTCGCGTG 297462 || ||| | |||||| || || ||| || ||||| || || ||| ||| Sbjct 32658 GATAAATCGATCGAGT--GATCTTTTGGAGTCGAGTAAAAATGTAACGGGCAGACGCACT 32715 Query 297463 ATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTG-ATGT 297521 ||| || || |||||||||| || ||| ||||| || || || | | | ||| | || | Sbjct 32716 ATCTTTCCCTCCCTGCAATCGCGTACCAAACTGCCCATCGGGGA-CGAGAAGTGGTATAT 32774 Query 297522 TATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGA-TGCTTCG 297580 |||| ||||||| | || || || ||| | ||||| |||||| || |||| || Sbjct 32775 TATTCGATCCGACAAAGTCTTGCGCCAGGCCGATTATGGTTGATTGCAGCGACTGCT-CG 32833 Query 297581 CCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCG 297640 ||||| || |||||| ||||| | || || || ||| |||||| ||||| | | Sbjct 32834 CCATGATGGTAGGCGGCGTGCTCGGAGACATACCCTGTGAGCTGTGCGACCTTGATGGAC 32893 Query 297641 GTCGTCAAATTGCGCTTGAAAGC-TGAATATATCACTTTCCGTTGAGAAGGTTTGAAACC 297699 | | | ||| ||||| ||||| ||| | || | || || || || ||||| || Sbjct 32894 TTTATGAGATTTCGCTT-AAAGCATGAGAACATAATCTTTCGCTGCCCCGGCTTGAATCC 32952 Query 297700 ATCAACGACCGACGGAATGCTTCGTTC-CAGATCGTACCGCGAGAACAAAATAAGTTCCT 297758 || || || || || || |||||| ||| || | || ||| || || |||| Sbjct 32953 GTCCACCACAGAGGGGATCGATCGTTCACAGTCCGCGATG-GAAAACTGTATGAGCTCCT 33011 Query 297759 TGTCGATGAAGTC 297771 | ||||||||||| Sbjct 33012 TATCGATGAAGTC 33024 >seq243 Length=69200 Score = 96.9 bits (106), Expect = 8e-15 Identities = 364/553 (66%), Gaps = 16/553 (3%) Strand=Plus/Plus Query 297227 CGCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCG 297286 ||||||| ||| || | || || ||| ||||| | |||||||| || | | || Sbjct 1303 CGCTTCAAGTTCTCGATGACATCCCAGGGACTGTAATTGGGGATATTCGTGGCGAATCCA 1362 Query 297287 GTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCT 297346 || || || || || ||| ||||| || | |||| || || || || || || | Sbjct 1363 GTGCCAATGCCGGCCGTACCGTTCACAAGGACCATCGGTATGACTGGGACGTAGTAATGG 1422 Query 297347 GGTTCGATCTTGTCA-CCGTCATCATACAGATATTTCAGAAGATTATCGTCCGTATCGAC 297405 || |||| || | | |||||||||| | ||| | || | | ||| || | || | Sbjct 1423 GGCTCGA-CTGGAAATCCGTCATCATCCTTATAGTCCAATACCTCATCATCTTCA-CGGC 1480 Query 297406 GA-AAACCTGTCGAGTCTGAGGGTTC--AGTTTTGTGAAAATATATCGTGCACTCGCGTG 297462 || ||| | |||||| || || ||| || ||||| || || ||| ||| Sbjct 1481 GATAAATCGATCGAGT--GATCTTTTGGAGTCGAGTAAAAATGTAACGGGCAGACGCACT 1538 Query 297463 ATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTG-ATGT 297521 ||| || || |||||||||| || ||| ||||| || || || | | | ||| | || | Sbjct 1539 ATCTTTCCCTCCCTGCAATCGCGTACCAAACTGCCCATCGGGGA-CGAGAAGTGGTATAT 1597 Query 297522 TATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGA-TGCTTCG 297580 |||| ||||||| | || || || ||| | ||||| |||||| || |||| || Sbjct 1598 TATTCGATCCGACAAAGTCTTGCGCCAGGCCGATTATGGTTGATTGCAGCGACTGCT-CG 1656 Query 297581 CCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCG 297640 ||||| || |||||| ||||| | || || || ||| |||||| ||||| | | Sbjct 1657 CCATGATGGTAGGCGGCGTGCTCGGAGACATACCCTGTGAGCTGTGCGACCTTGATGGAC 1716 Query 297641 GTCGTCAAATTGCGCTTGAAAGC-TGAATATATCACTTTCCGTTGAGAAGGTTTGAAACC 297699 | | | ||| ||||| ||||| ||| | || | || || || || ||||| || Sbjct 1717 TTTATGAGATTTCGCTT-AAAGCATGAGAACATAATCTTTCGCTGCCCCGGCTTGAATCC 1775 Query 297700 ATCAACGACCGACGGAATGCTTCGTTC-CAGATCGTACCGCGAGAACAAAATAAGTTCCT 297758 || || || || || || |||||| ||| || | || ||| || || |||| Sbjct 1776 GTCCACCACAGAGGGGATCGATCGTTCACAGTCCGCGATG-GAAAACTGTATGAGCTCCT 1834 Query 297759 TGTCGATGAAGTC 297771 | ||||||||||| Sbjct 1835 TATCGATGAAGTC 1847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102870207459550