Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq254 219 5e-52 seq243 109 7e-19 seq171 100 3e-16 seq531 96.9 4e-15 >seq254 Length=68440 Score = 219 bits (242), Expect = 5e-52 Identities = 1110/1751 (63%), Gaps = 46/1751 (3%) Strand=Plus/Plus Query 113594 GATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAG 113653 || || || ||||| ||||| ||||| || || | |||||| | || | |||||||| Sbjct 30969 GACCGCAGATAGTAGATCCCTGTCTTCAGTCCACGTTTCCAGCCGTAAAAGTGCATCGAT 31028 Query 113654 GACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATG 113713 | || | ||||| ||||| || | ||| || |||| || ||| ||| || || Sbjct 31029 GTCAGCGTGGAGCTCGTTGGCGACTCGAGGAAAAGATTCAAGCTATGGCTTTGGTCAATA 31088 Query 113714 AAG--CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAG 113771 || || || || |||||||||||| || | ||||| ||||||||||||||||| Sbjct 31089 TAGGCCGACCGCGT--CGCCGCCATATCGATAATGTCCTTTTGCTTGATTTCCCACACAG 31146 Query 113772 TTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCG 113831 ||| ||| | | ||| | ||||| ||| | || | || | ||| | | ||| Sbjct 31147 TTCGGTATATCTCCTTGAGCTCATCGCGGAGACCCTCAATGTGTTGCACGCTGCCGTTG- 31205 Query 113832 CCTTGACCATGAGA-TCCTTCATATCCTTTGA--CCAGAGACCAATCTTTTTGAGATCCT 113888 ||| | ||||| | ||| | | | | ||| || || || | | |||| Sbjct 31206 --TTGGCGATGAGTGTATTTCGGGACGTCTCATTCCACAGGCCCTCCTGGATCAAATCCC 31263 Query 113889 CCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATAT 113948 || || | |||||| || |||||||| |||| || | |||||| || | Sbjct 31264 TGACAAGGCACCGATTGACGACTGGGAACTCACCACTGAGGACTCGGCGCAGATACATGT 31323 Query 113949 TGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGG 114008 || |||||||||||||||||||||| ||||| ||||| ||||| ||| ||| || | Sbjct 31324 TGCTCGTGTATGGCTCAAAGCACTCGTTGTTTCCCAATATTTGACTCGTGCTGGCAGTCG 31383 Query 114009 GCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGG 114068 |||| ||||||| || || || || |||| || | | | | ||||| ||| | Sbjct 31384 GCATAGGTGCCACAAGGAGACTATTTCGGACGCCATGCTTCATGATGCGGGACTTCAATT 31443 Query 114069 CGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATAC 114125 | ||||||| | | ||| | | | | | |||||| || |||||||||| | Sbjct 31444 CCGCCCAGTCCCATCGCCCGCTCTTCGGCGTCACGTCCCACATGTCGTACTGGAGGATTC 31503 Query 114126 CTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGG 114185 | | | |||| ||||| | || || || ||||| || | ||| | Sbjct 31504 CCTTGCTCACTGGACTTCCCTGGTACGTTTCATACGGGCCATCCTCACTCGCGATGAGAC 31563 Query 114186 AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGG 114245 |||| |||| || || ||| || || || ||||| ||| | || || ||||| Sbjct 31564 AGCTTTCCTCCAGCGCGGCGAAGTAGATGGTTTCAAATATGTCTTCGTTGATGCGCTTGG 31623 Query 114246 CCTCGTCG-----GAATCAAACGC-GAGTCGGCACAAAATAAATACATCCGCGAGACCTT 114299 ||| | || |||| || || ||| | | | ||||| || || || | Sbjct 31624 CCTTGGCGCTCGTGAATGGAATGCGGAGATTG------AGGTAGACATCGGCAAGTCCCT 31677 Query 114300 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT--TCGAGCGGTCTCCACGGG 114357 | || || ||||| || || ||||| | ||| || ||| ||| || ||||| || Sbjct 31678 GCACCCCAAGGCCGATGGGTCGATGCCGCATGTT--GCTTCGTCGGGCCTCTTCCACTGG 31735 Query 114358 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 114417 ||||| || | ||||| || ||| || ||| | || | | | |||| | Sbjct 31736 GTAAAAGTTGCGGTCGATGACGAGATTGAGGTTTCTCGTTGCGATGCGTACGATTCTGCG 31795 Query 114418 AAGCTTTTCGTAATCAAAACTGCGAG---TCTCTTCATTGACATACTTAGGAAGGGCGAT 114474 |||||| || || || | || || | ||||| |||| |||| || || |||| Sbjct 31796 AAGCTTCTCATAGTCCA---TGTCAGTTTTGTCTTCGTTGAGGAACTTTGGGAGCGCGAG 31852 Query 114475 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 114534 || || || || ||||| | | |||||| | |||||||| || || ||||| || Sbjct 31853 GGAGGCGAGGTTGCACACGGCGACTTCATCCGGTGCGGTGTACTCGATGATCTCCGTGCA 31912 Query 114535 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 114594 || |||||| | || ||||| || | ||| | || || ||||| ||| || ||||| Sbjct 31913 CAGATTTGAGCATTTGATGGTTCCAAGGTTTTGCTGGTTCGACTTGCGGTTGCATGCATC 31972 Query 114595 CTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGAC 114654 ||||| |||| || ||||| |||||||| | || | | | || || ||||| Sbjct 31973 TTTGTATAGCAAATACGGCGTTCCCGTCTCGATCTGCGCTTCAATGATGGCGAACCAGAG 32032 Query 114655 ATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGC 114714 ||| || || || || || |||| |||||||| ||||| Sbjct 32033 ATCTTGTGCGTCCATCGTCTTGTACCCTTTATTATCCTTCTCGTACTGCTCATAGAGACT 32092 Query 114715 TTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGA 114774 || || || | ||| | || | |||||| || || | | || ||| || | Sbjct 32093 CTCGAATTCAGCGCCCCAGCAATCGGCGAGCCCAGGGGCTGTTTTGGGATCGAAAAGTGT 32152 Query 114775 CCA-TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGA 114833 ||| ||| || | || || ||||||||||||||||| |||||||||||| | ||| Sbjct 32153 CCATTTGGCCTTTC-GCTGCACTCGCTTCATGAAGAGGTCGGGGATCCAGAGACCGTAGA 32211 Query 114834 AGAGATCCCGACAGCG-AGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 114892 |||| || | || | || || | | || || || || | |||||| ||| Sbjct 32212 AGAGGTCTCTCGCCCGAATCTCCTCCTTGCCGGTG-TTCTTCTTCAGGTTCAAAAAATCC 32270 Query 114893 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCA 114949 || ||||| ||||||||||| || ||||| | || | || || || | ||| Sbjct 32271 ATAATATCAGCGTGCCACGGCTCAAGGTAGATGGCAAAGCTGCCTTTGCGCTTTCCACCT 32330 Query 114950 GCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCA 115009 | |||| || || | || ||| | || || || || ||||| || | || |||| | Sbjct 32331 CCTTGGTCGACGTAGCGGGCAGTGTCGTTGAAGACTCGCAGCATGGGGACTATTCCATTA 32390 Query 115010 GATTGGCCATTTGTCCCCCGAATACGAGACTT--ATTGGCTCTGACATCATGGATGTGCA 115067 ||||||||||| ||||| | ||| | | || | | || | |||| Sbjct 32391 CTGACCCCATTTGTCCCGCGAAT--GTAGCTTCCAGAGCTTCGAATGTTGTGAACATGCA 32448 Query 115068 TACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCC 115127 ||||| || || ||| ||||| |||| || | |||| | |||| || | Sbjct 32449 AGCCAATGCCACCACTGTTCTTCGAGATGAGCGCACATGTCTTGAGCGTATCGTAAATAC 32508 Query 115128 CGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTG 115187 | |||||||| ||| | || || | |||||||| || ||| || || | ||| | Sbjct 32509 CTTCGATCGAATCATCTTTGAGCGCCAGCAGGAAGCAACTGCTCATCTGCGGGCGTGGGG 32568 Query 115188 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGT 115247 | || || ||| |||| || || ||||| || ||||||| || || || | | || | Sbjct 32569 TGCCGGCATTGTAGAGCGTGGGGGTCGCATGTGTGAACATTCCCTGCGAGAGATACTCAT 32628 Query 115248 AGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 115307 | ||||| || || || | || | |||||| |||| | ||| ||||| | || Sbjct 32629 ACGTCTCGAAAACCCGTGGTAGGTTTGTGGAGTGAATTCCGAGGGCGACGCGCATGAGCA 32688 Query 115308 TGTATTGGGGT 115318 |||| || ||| Sbjct 32689 TGTACTGTGGT 32699 >seq243 Length=69200 Score = 109 bits (120), Expect = 7e-19 Identities = 568/890 (64%), Gaps = 31/890 (3%) Strand=Plus/Minus Query 114452 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 114511 |||||| || | ||||||| || ||||| ||||| || || | ||| || Sbjct 22433 TTGACAAACATCGGAAGGGAAATCGACGCGAGATTGCAGACGGCAACCTCGTCAGGGGAT 22374 Query 114512 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 114571 || || || | ||||| || |||| || || ||| || |||||||| ||||| ||| Sbjct 22373 GTATATTCGACGATTTCAGTGCACAGGTTGCTACACTTGATCGTGCCCAAATTCTTCTGA 22314 Query 114572 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 114631 || |||||| ||||| || ||||| ||||||||||| || || || || || | ||| Sbjct 22313 TTGGACTTTTCATTACATGCGTCCTTATAAAGCATGTACGGGGTACCGGTTTCTATCTGG 22254 Query 114632 GACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCACAGTGGC-GTTGGCTCGCCCCT- 114689 |||| || || ||||| || || || | ||| | ||| | ||||| Sbjct 22253 GACTCGATGATTTGGAACCAGA-----GC-TCTTGCGCCGTGACTGTTTTCGTTCCCCTG 22200 Query 114690 CCTCCTCGT--ACTTTG--TGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 114745 ||| | ||| | ||| ||| | |||||||||||| || | || | ||| Sbjct 22199 CCTTCACGTTCATATTGCTCGTATAATTTTTCAAACTCTTCTCCATAGCAGTCAGCGAGG 22140 Query 114746 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATG 114805 ||||| || ||| ||| ||| || | ||| | || | | ||||||||||| Sbjct 22139 CCTGGAGCAATATTAGGGTCGAAAAGTGTCCAGTTCCCTGATTTTTGCACACGCTTCATA 22080 Query 114806 AAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTC-ATCCCC 114864 || | ||||| |||||||| | | |||||||| ||| ||| |||||| |||| Sbjct 22079 AACAAATCTGGAATCCAGAGTCCATAAAAGAGATCACGAGCGCGCATTTCTTCTTTCCCG 22020 Query 114865 CTGATTGAGACGC---AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 114921 || || ||| | | | ||| || | ||||| || ||||| ||||| | || Sbjct 22019 GTGTTT----CGCTTGAGCGTGAGAAATTCGAAAATATCTGCATGCCAGGGTTCTACATA 21964 Query 114922 CACCGCGATTGACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCTGTGGCATT 114978 | || | || || || | | |||| | |||| ||||| | || || |||| Sbjct 21963 GATTGCAAATGCACCTTTTCTTTTGCCACCACCTTGGTCAACATATCGTGCCGTATCATT 21904 Query 114979 AAATACGCGAAGCATTGGAATGATACCATCAGATTG-GCCATTTGTCCCCCGAATACGAG 115037 || || ||||||||||||| | |||| | | | ||||| || || || | Sbjct 21903 GAAAACACGAAGCATTGGAACAAGCCCAT-TGCTCGTTCCATTGGTTCCAGCGAT--GTA 21847 Query 115038 ACTT--ATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGAT 115095 |||| | || | || || || | ||| | || || || || ||| | || ||| Sbjct 21846 ACTTCCACATGCGCGGATGTCGTGCACGTGTAGGCCGATTCCTCCGGCCGATTTGCTGAT 21787 Query 115096 TTGCGCGCA-CTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGA 115154 |||| || | || || || || | || || || ||||| |||| | || | Sbjct 21786 AAGCGCACATGTTCG-CAGTGTGTCGAATATTCCTGGTATAGAGTCTTCCTTGGTCGCAA 21728 Query 115155 TAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCG 115214 | | ||| ||||| ||| || || | || ||||| || || || || |||||||||| Sbjct 21727 TTAAGAAACAGCTACTCATCTGAGGTTTCGGAGTACCTGCATTAAACAGCGTTGGTGTCG 21668 Query 115215 CGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTT 115274 |||| | ||| |||| ||| | | | |||| | || || || || || Sbjct 21667 CGTGCGTAAACCATCCTTCGGAGAGCAATTTGTAGCTTTCTTTCACTGCTTCAAAATCAG 21608 Query 115275 CCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCC 115324 |||| || ||||||| ||||||| || ||||||||| ||| | ||| Sbjct 21607 GTGCGTGGATTCCGATCGCAACCCGCAAAAGCATGTATTGAGGTCTCTCC 21558 >seq171 Length=86538 Score = 100 bits (110), Expect = 3e-16 Identities = 190/277 (69%), Gaps = 7/277 (3%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 ||||| |||||||| ||||| || || |||| | |||||||| | || |||||| Sbjct 4727 CCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAAACCTGGCATTAATCCTCGCTTC 4668 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | ||||||||| ||||| || || ||||||||||||||||||| |||||| Sbjct 4667 TTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAAGATTCCCTCCACAGCTGCGAAC 4608 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 | | || | || || || ||| | || | || ||| || || |||||||| Sbjct 4607 CCGACAAGTCTTTCGGCGAACGAGTCTG---CTGAATTAATCCATTTAATTGCCCACTGA 4551 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT--CTTTTCTG 126302 ||||| | || | |||||| | |||| || || | ||||| |||| ||| |||| Sbjct 4550 GCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTGAAGAG--CCTTGCCTTATCTG 4493 Query 126303 ATGGATCTTTGATGTACTTATCTATGAGTTTTGAATA 126339 | | | ||||| ||| | || || || | ||||| Sbjct 4492 CTTGGTTCTTGATATACGTGTCGATCAGGATGGAATA 4456 >seq531 Length=50098 Score = 96.9 bits (106), Expect = 4e-15 Identities = 189/277 (68%), Gaps = 7/277 (3%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 ||||| |||||||| ||||| || || |||| | |||||||| | || |||||| Sbjct 47713 CCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAAACCTGGCATTAATCCTCGCTTC 47654 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | ||||||||| ||||| || || ||||||||||||||||||| |||||| Sbjct 47653 TTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAAGATTCCCTCCACAGCTGCGAAC 47594 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 | | || | || || || ||| | || | || ||| || || ||||| || Sbjct 47593 CCGACAAGTCTTTCGGCGAACGAGTCTG---CTGAATTAATCCATTTAATTGCCCATTGA 47537 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT--CTTTTCTG 126302 ||||| | || | |||||| | |||| || || | ||||| |||| ||| |||| Sbjct 47536 GCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTGAAGAG--CCTTGCCTTATCTG 47479 Query 126303 ATGGATCTTTGATGTACTTATCTATGAGTTTTGAATA 126339 | | | ||||| ||| | || || || | ||||| Sbjct 47478 CTTGGTTCTTGATATACGTGTCGATCAGGATGGAATA 47442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597348425424440