Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2 111 2e-19 >seq2 Length=132159 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||| || || ||||| ||||| || | ||| || ||| | || || |||||||| || Sbjct 78181 GTGCTTTCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCCTCGAGCTGCTTTCCG 78122 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 42130 ||||| ||||||||||||||||| | ||| | | ||||||| | ||| ||||| || Sbjct 78121 GCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGT-CTTGAACTTTTGCCTT 78063 Query 42131 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190 || | | | || ||| | | |||||| |||| ||||| || ||||| || || || Sbjct 78062 GATGTTTTCAATGGTATCGTTTGCTTCCACCTCGAGTGTGATAGTCTTGCCAGTCAGAGT 78003 Query 42191 CTTTACAAAGATTTGCAT 42208 || || ||||| ||||| Sbjct 78002 TTTGACGAAGATCTGCAT 77985 Score = 102 bits (112), Expect = 9e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||| || || ||||| ||||| || | ||| || ||| | || || |||||||| || Sbjct 77953 GTGCTTTCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCCTCGAGCTGCTTTCCG 77894 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 42130 ||||| ||||||||||||||||| | ||| | | ||||||| | ||| ||||| || Sbjct 77893 GCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGT-CTTGAACTTTTGCCTT 77835 Query 42131 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190 || | | | || ||| | | |||||| || | |||||||| || || || | || Sbjct 77834 GATGTTTTCAATGGTATCGTTTGCTTCCACCTCAAGGGTGATGGTCTTACCAGTCAAAGT 77775 Query 42191 CTTTACAAAGATTTGCAT 42208 || || ||||| ||||| Sbjct 77774 TTTGACGAAGATCTGCAT 77757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543208094419120