Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq254 163 3e-35 >seq254 Length=68440 Score = 163 bits (180), Expect = 3e-35 Identities = 493/755 (65%), Gaps = 16/755 (2%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || ||||| || || | ||| || || ||||| || |||||| || |||||| Sbjct 32596 GCGACCCCCACGCTCTACAATGCCGGCACCCCACGCCCGCAGATGAGCAGTTGCTTCCTG 32537 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || || ||| | || || ||| || |||| ||| | |||||| |||||| | Sbjct 32536 CTGGCGCTCAAAGATGATTCGATCGAAGGTATTTACGATACGCTCAAGACATGTGCGCTC 32477 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || || || || || || | ||| ||| || | || | || | Sbjct 32476 ATCTCGAAGAACAGTGGTGGCATTGGCTTGCATGTTCACAACATTCGAAGCTCTGGAAGC 32417 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||||| || ||||| | || || | ||||| ||||| || ||||||||| Sbjct 32416 TACATTCGCGGGACAAATGGGGTCAGTAATGGAATAGTCCCCATGCTGCGAGTCTTCAAC 32357 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || | || |||||||| ||||| || ||||| | | | || || || || |||| Sbjct 32356 GACACTGCCCGCTACGTCGACCAAGGAGGTGGAAAGCGCAAAGGCAGCTTTGCCATCTAC 32297 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||||| || | || ||| | ||||| |||||| |||||| Sbjct 32296 CTTGAGCCGTGGCACGCTGATATTATGGATTTTTTGAACCTGAAGAAGAACACCGGCAAG 32237 Query 94252 GATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || ||||| |||| |||||||||||||||| ||||||| | || ||||| || ||| Sbjct 32236 GA---GGAGATTCGGGCGAGAGACCTCTTCTACGGTCTCTGGATCCCCGACCTCTTCATG 32180 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 || || || || ||| || |||| ||||| |||||| | || || || Sbjct 32179 AAGCGAGTGCAGCGAAAGGCCAAATGGACACTTTTCGATCCCAAAACAGCCCCTGGGCTC 32120 Query 94369 TCCGACGTTTGTGGATCGC-GTTTTGAAGACT-TGTATGCTCGTTACGAATCGCAGGGCA 94426 |||| || ||| ||| | || ||| | | |||| | ||||| | ||| | Sbjct 32119 GCCGA--TTGCTGGGGCGCTGAATTCGAGAGTCTCTATGAGCAGTACGA---GAAGGATA 32065 Query 94427 AGGCCAGG---AAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGG 94483 | || ||| ||||| || | || ||| ||| | || | ||| Sbjct 32064 ATAAAGGGTACAAGACGATGGACGCACAAGATCTCTGGTTCGCCATCATTGAAGCGCAGA 32005 Query 94484 TGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGC 94543 | |||||||| ||||| || | | | ||| || | |||| |||||| ||||||| Sbjct 32004 TCGAGACGGGAACGCCGTATTTGCTATACAAAGATGCATGCAACCGCAAGTCGAACCAGC 31945 Query 94544 AGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTC 94603 | |||| || ||||| |||| ||||||||||| ||||| ||||||| || | | Sbjct 31944 AAAACCTTGGAACCATCAAATGCTCAAATCTGTGCACGGAGATCATCGAGTACACCGCAC 31885 Query 94604 CGGACGAGATTGCTGTGTGTAACCTGGGCTCCATC 94638 |||| || | || ||||| ||||| | |||| || Sbjct 31884 CGGATGAAGTCGCCGTGTGCAACCTCGCCTCCCTC 31850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494718914460280