Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 >seq2 Length=132159 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 || || |||||||||||||| || || ||| |||||||| || || |||| | Sbjct 78175 TCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCCTCGAGCTGCTTTCCGGCGAAA 78116 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TG 138542 || || ||||| ||||| || || || ||||| ||||| ||| ||||| || || | Sbjct 78115 ATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCT-TGAACTTTTGCCTTGATGTT 78057 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 ||| | ||| ||| | | |||||||||| || | || || |||||||||||||| || Sbjct 78056 TTCAATGGTATCGTTTGCTTCCACCTCGAGTGTGATAGTCTTGCCAGTCAGAGTTTTGAC 77997 Query 138603 AAAAATCTGCATG 138615 || ||||||||| Sbjct 77996 GAAGATCTGCATG 77984 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 || || |||||||||||||| || || ||| |||||||| || || |||| | Sbjct 77947 TCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCCTCGAGCTGCTTTCCGGCGAAA 77888 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TG 138542 || || ||||| ||||| || || || ||||| ||||| ||| ||||| || || | Sbjct 77887 ATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTC-TTGAACTTTTGCCTTGATGTT 77829 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 ||| | ||| ||| | | |||||||| | || | || |||||||||| |||||| || Sbjct 77828 TTCAATGGTATCGTTTGCTTCCACCTCAAGGGTGATGGTCTTACCAGTCAAAGTTTTGAC 77769 Query 138603 AAAAATCTGCATGGC 138617 || |||||||| || Sbjct 77768 GAAGATCTGCATAGC 77754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258101126960