Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 4e-13 >seq2 Length=132159 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | ||| | |||||||| ||||| || |||||||| || Sbjct 77985 TGCCACCACGCAGCCGCAGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTG 77926 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | | | || || | || || || ||| | || | ||||| ||||| || Sbjct 77925 ACAGCGTGCGCCCATCCTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTG 77866 Query 15068 GAATTCCTTCCTTGTC-ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 | |||||||||||||| || |||||| || | |||| || |||||| | ||| Sbjct 77865 GGATTCCTTCCTTGTCTTGAACTTTTGC-CTTGATGTTTTCAATGGTATCGTTTGCTTCC 77807 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || | ||| ||||| ||||| |||| |||||| || || || |||||| Sbjct 77806 ACCTCAAGGGTGATGGTCTTACCAGTCAAAGTTTTGACGAAGATCTGCATA 77756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357388981489505