Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq243 95.1 1e-14 seq254 87.8 2e-12 >seq243 Length=69200 Score = 95.1 bits (104), Expect = 1e-14 Identities = 350/537 (65%), Gaps = 25/537 (5%) Strand=Plus/Plus Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAA 123293 ||||| || |||| |||| | | | || | || ||||| || || |||| | ||| Sbjct 21889 ATGCTTCGTGTTTTCAATGATACGGCACGATATGTTGACCAAGGTGGTGGCAAAAGAAAA 21948 Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353 || || | || |||||| ||||||| ||||| | ||| | | ||| ||| | | | Sbjct 21949 GGTGCATTTGCAATCTATGTAGAACCCTGGCATGCAGATATTTTCGAATTTCTCACGCTC 22008 Query 123354 AAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTA 123413 || || |||| ||| ||||||| | || || ||| | || || | | ||| | Sbjct 22009 AAGCGAAACACCGGGAAAGAAGAAATGCGCGCTCGTGATCTCTTTTATGGACTCTGGATT 22068 Query 123414 CCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGAT 123473 || |||||||||||| || || || | || ||| | || | | ||| | Sbjct 22069 CCAGATTTGTTTATGAAGCGTGTGCAAAAATCAGGGAACTGGACACTTTTC-GACCCTAA 22127 Query 123474 CGGTG-TCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATA 123532 || ||| ||| | ||| || || | ||||||| | || |||| |||||| Sbjct 22128 TATTGCTCCAGGCCTCGCTGACTGCTATGGAGAAGAGTTTGAAAAATTATACGAGCAATA 22187 Query 123533 CGAGCGCGAAGGCA----AAC-AGGTTAGTCAGGTTCCGGCACGTGATTTG-TTCAAATT 123586 || || ||||||| ||| | ||||| | ||| | | | || ||| || Sbjct 22188 TGAACGTGAAGGCAGGGGAACGAAAACAGTCACGGC---GCAAGAGCTCTGGTTCCAA-- 22242 Query 123587 TATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAA 123646 || ||||| | || | |||||||| || ||||||||||| || || ||||| || | Sbjct 22243 -ATCATCGAGTCCCAGATAGAAACCGGTACCCCGTACATGCTTTATAAGGACGCATGTA- 22300 Query 123647 CAGGAAAA--CCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAA 123704 | ||||| ||||||||| || ||||| || || || ||||| || || ||| | ||| Sbjct 22301 -ATGAAAAGTCCAATCAGAAGAATTTGGGCACGATCAAGTGTAGCAACCTGTGCACTGAA 22359 Query 123705 ATTATCGAATACAGCGATGCC--GATCAAGTGGCCGTGTGTAATTTGGCTTCGATTT 123759 || ||||||| | || || || | || ||||| || ||| | || ||||||| Sbjct 22360 ATCGTCGAATATA--CATCCCCTGACGAGGTTGCCGTCTGCAATCTCGCGTCGATTT 22414 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 124446 TACAAAACCGTGTGGGAAATGAAAAATAAACGATTAATTGAAATGGCCGTCGACCGAGGC 124505 |||| |||||| ||||| || || | ||| | || | |||||||||| || || Sbjct 23122 TACAGAACCGTCTGGGAGATCAAGCAAAAAGACCTTATCAATATGGCCGTCGCGCGTGGT 23181 Query 124506 GCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAACCCACCTAC-GCCCG 124564 || |||| || ||||| ||||| | || | ||| ||| | |||| | || || | Sbjct 23182 GCATACATCGACCAAAGCCAATCCCTGAATCTCTTTTTAGAAGC-CCCAACAACTGCGCA 23240 Query 124565 CATGACCAGCATACACATGCACGCGTGGAGCAGCGGACTCAAAACGGGCATGTATTACTT 124624 | || ||| ||| | ||||||||| || ||||||||||| || |||||||| | Sbjct 23241 GCTCACGTCCATGCACTTCTACGCGTGGACCAAAGGACTCAAAACCGGAATGTATTATCT 23300 Query 124625 AAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAAATCTA 124674 || | ||||| | || ||||| |||||||||||||| | |||| Sbjct 23301 TCGATCTCGTCCGGCCGTTGACGCCATCAAATTTACCGTCGACTATTCTA 23350 >seq254 Length=68440 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 || || ||| | || |||| || ||||||||||| |||| |||||||| || |||||| Sbjct 32020 ATCATTGAAGCGCAGATCGAGACGGGAACGCCGTATTTGCTATACAAAGATGCATGCAAC 31961 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 | || | || ||| ||| | ||||| || ||||| ||||| ||| | || || Sbjct 31960 CGCAAGTCGAACCAGCAAAACCTTGGAACCATCAAATGCTCAAATCTGTGCACGGAGATC 31901 Query 123708 ATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAA 123745 ||||| |||| || | ||| |||| |||||||| || Sbjct 31900 ATCGAGTACACCGCACCGGATGAAGTCGCCGTGTGCAA 31863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451999284522280