Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq254 250 3e-61 >seq254 Length=68440 Score = 250 bits (276), Expect = 3e-61 Identities = 1121/1752 (64%), Gaps = 48/1752 (3%) Strand=Plus/Plus Query 115555 GATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAG 115614 || || || ||||| ||||| ||||| || || | |||||| | || | ||||| || Sbjct 30969 GACCGCAGATAGTAGATCCCTGTCTTCAGTCCACGTTTCCAGCCGTAAAAGTGCATCGAT 31028 Query 115615 GACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATG 115674 | || | ||||| ||||| || | ||| || |||| || ||| ||| || || Sbjct 31029 GTCAGCGTGGAGCTCGTTGGCGACTCGAGGAAAAGATTCAAGCTATGGCTTTGGTCAATA 31088 Query 115675 AAG--CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAG 115732 || || || || |||||||||||| || | ||||| ||||||||||||||||| Sbjct 31089 TAGGCCGACCGCGT--CGCCGCCATATCGATAATGTCCTTTTGCTTGATTTCCCACACAG 31146 Query 115733 TTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTG 115792 ||| ||| | | ||| | ||||| ||| | || | || | ||| | ||| || Sbjct 31147 TTCGGTATATCTCCTTGAGCTCATCGCGGAGACCCTCAATGTGTTGCACGCTGCCGT-TG 31205 Query 115793 CCTTGACCATGAGA-TCCTTCATATCCTTTGA--CCAGAGACCAATCTTCTTGAGATCCT 115849 ||| | ||||| | ||| | | | | ||| || || || | | |||| Sbjct 31206 --TTGGCGATGAGTGTATTTCGGGACGTCTCATTCCACAGGCCCTCCTGGATCAAATCCC 31263 Query 115850 CCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGT 115909 || ||| | |||||| || |||||||| |||| || | |||||| |||| Sbjct 31264 TGACAAGGCACCGATTGACGACTGGGAACTCACCACTGAGGACTCGGCGCAGATACATGT 31323 Query 115910 TGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGG 115969 || |||||||||||||||||||||| ||||| ||||| ||||| ||| ||| || | Sbjct 31324 TGCTCGTGTATGGCTCAAAGCACTCGTTGTTTCCCAATATTTGACTCGTGCTGGCAGTCG 31383 Query 115970 GCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGG 116029 |||| ||||||| || || || || |||| || | | | ||||| ||| | Sbjct 31384 GCATAGGTGCCACAAGGAGACTATTTCGGACGCCATGCTTCATGATGCGGGACTTCAATT 31443 Query 116030 CGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATAC 116086 | ||||||| | | ||| | | | | |||||||| || |||||||||| | Sbjct 31444 CCGCCCAGTCCCATCGCCCGCTCTTCGGCGTCACGTCCCACATGTCGTACTGGAGGATTC 31503 Query 116087 CTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGG 116146 | | | | |||| ||||| | || ||||| ||||| || | ||| | Sbjct 31504 CCTTGCTCACTGGACTTCCCTGGTACGTTTCATACGGGCCATCCTCACTCGCGATGAGAC 31563 Query 116147 AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGG 116206 |||| |||| || || ||| || || || ||||| ||| | || || ||||| Sbjct 31564 AGCTTTCCTCCAGCGCGGCGAAGTAGATGGTTTCAAATATGTCTTCGTTGATGCGCTTGG 31623 Query 116207 CCTCGTCG-----GAATCAAACGC-GAGACGGCACAAAATAAATACATCCGCGAGACCTT 116260 ||| | || |||| || || |||| | | | ||||| || || || | Sbjct 31624 CCTTGGCGCTCGTGAATGGAATGCGGAGATTG------AGGTAGACATCGGCAAGTCCCT 31677 Query 116261 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT--TCGAGCGGTCTCCACGGG 116318 | || || ||||| || || ||||| | ||| || ||| ||| || ||||| || Sbjct 31678 GCACCCCAAGGCCGATGGGTCGATGCCGCATGTT--GCTTCGTCGGGCCTCTTCCACTGG 31735 Query 116319 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 116378 ||||| || | ||||| || ||| || ||| | || | | | |||| | Sbjct 31736 GTAAAAGTTGCGGTCGATGACGAGATTGAGGTTTCTCGTTGCGATGCGTACGATTCTGCG 31795 Query 116379 AAGCTTTTCGTAATCAAAACTGCGAG---TCTCTTCATTGACATACTTAGGAAGGGCGAT 116435 |||||| || || || | || || | ||||| |||| |||| || || |||| Sbjct 31796 AAGCTTCTCATAGTCCA---TGTCAGTTTTGTCTTCGTTGAGGAACTTTGGGAGCGCGAG 31852 Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495 || || || || ||||| | | |||||| | |||||||| || || ||||| || Sbjct 31853 GGAGGCGAGGTTGCACACGGCGACTTCATCCGGTGCGGTGTACTCGATGATCTCCGTGCA 31912 Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 116555 || |||||| | || ||||| || | ||| | || || ||||| ||| || ||||| Sbjct 31913 CAGATTTGAGCATTTGATGGTTCCAAGGTTTTGCTGGTTCGACTTGCGGTTGCATGCATC 31972 Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATAC 116615 ||||| |||| ||| ||||| |||||||| | || | | | || || ||| | Sbjct 31973 TTTGTATAGCAAATACGGCGTTCCCGTCTCGATCTGCGCTTCAATGATGGCGAACCAGAG 32032 Query 116616 ATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGC 116675 ||| || || || || || |||| |||||||| ||||| Sbjct 32033 ATCTTGTGCGTCCATCGTCTTGTACCCTTTATTATCCTTCTCGTACTGCTCATAGAGACT 32092 Query 116676 CTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAG 116734 ||| || || | ||| |||| || | |||||| || || | | ||| ||| || | Sbjct 32093 CTCGAATTCAGCGCCC-CAGCAATCGGCGAGCCCAGGGGCTGTTTTGGGATCGAAAAGTG 32151 Query 116735 ACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAG 116793 ||| ||| || | || || ||||||||||||||||| ||||||||||| | || Sbjct 32152 TCCATTTGGCCTTTC-GCTGCACTCGCTTCATGAAGAGGTCGGGGATCCAGAGACCGTAG 32210 Query 116794 AAGAGATCCCGACAGCG-AGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 116852 ||||| || | || | || || | | || || || || | |||||| || Sbjct 32211 AAGAGGTCTCTCGCCCGAATCTCCTCCTTGCCGGTG-TTCTTCTTCAGGTTCAAAAAATC 32269 Query 116853 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACC 116909 ||| ||||| ||||||||||| || ||||| | || | || ||||| | ||| Sbjct 32270 CATAATATCAGCGTGCCACGGCTCAAGGTAGATGGCAAAGCTGCCTTTGCGCTTTCCACC 32329 Query 116910 AGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATC 116969 | |||| || || | || || |||| || || || ||||| || | || |||| Sbjct 32330 TCCTTGGTCGACGTAGCGGGCAGTGTCGTTGAAGACTCGCAGCATGGGGACTATTCCATT 32389 Query 116970 AGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTG-GC-TCTGACATCGTGGATGTGC 117027 | ||||||||||| ||||| | ||| | || || | | ||| | ||| Sbjct 32390 ACTGACCCCATTTGTCCCGCGAAT--GTAGCTTCCAGAGCTTCGAATGTTGTGAACATGC 32447 Query 117028 ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATC 117087 | ||||| || || ||| ||||| | || || | |||| | |||| || Sbjct 32448 AAGCCAATGCCACCACTGTTCTTCGAGATGAGCGCACATGTCTTGAGCGTATCGTAAATA 32507 Query 117088 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGT 117147 || |||||||| ||| | || || | |||||||| || ||| || || | ||| Sbjct 32508 CCTTCGATCGAATCATCTTTGAGCGCCAGCAGGAAGCAACTGCTCATCTGCGGGCGTGGG 32567 Query 117148 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCG 117207 || || || ||| |||| || || ||||| || ||||||| || || || | | || Sbjct 32568 GTGCCGGCATTGTAGAGCGTGGGGGTCGCATGTGTGAACATTCCCTGCGAGAGATACTCA 32627 Query 117208 TAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAAC 117267 || ||||| || || || | || | |||||| |||| | ||| ||||| | | Sbjct 32628 TACGTCTCGAAAACCCGTGGTAGGTTTGTGGAGTGAATTCCGAGGGCGACGCGCATGAGC 32687 Query 117268 ATGTATTGGGGT 117279 ||||| || ||| Sbjct 32688 ATGTACTGTGGT 32699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613501885493880