Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2 113 1e-19 >seq2 Length=132159 Score = 113 bits (124), Expect = 1e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || || || || | ||||||||| | || || Sbjct 77977 CGCAGCCGCAGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGACAGCGTG 77918 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || ||||||||||||||||| ||||| ||||||||||| || |||||| Sbjct 77917 CGCCCATCCTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCT 77858 Query 199529 TCTCGCTCCTGAATCTTTTG-CTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || |||| |||||| ||| | | ||| | ||| || ||| ||| || || | Sbjct 77857 TCCTTGTCTTGAA-CTTTTGCCTTGATGTTTTCAATGGTATCGTTTGCTTCCACCTCAAG 77799 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || | |||||| || || || || Sbjct 77798 GGTGATGGTCTTACCAGTCAAAGTTTTGACGAAGATCTG 77760 Score = 111 bits (122), Expect = 4e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || || || || | ||||||||| | || || | ||||| Sbjct 78196 AGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCC 78137 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||||||||| ||||| ||||||||||| || |||||||| || Sbjct 78136 TCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 78077 Query 199538 TGAATCTTTTG-CTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 |||| |||||| ||| | | ||| | ||| || ||| ||| || || | ||||| || Sbjct 78076 TGAA-CTTTTGCCTTGATGTTTTCAATGGTATCGTTTGCTTCCACCTCGAGTGTGATAGT 78018 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || |||||||| || || || || Sbjct 78017 CTTGCCAGTCAGAGTTTTGACGAAGATCTG 77988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178911132281431