Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 >seq2 Length=132159 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || || || || || || |||||||| || || |||||| | || ||||||||||| ||| Sbjct 78181 GTGCTTTCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCCTCGAGCTGCTTTCCG 78122 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCT-TCTT 46515 ||||| || | ||||||||||| | || | | ||||||| | ||| ||| | ||| Sbjct 78121 GCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGT-CTTGAACTTTTGCCTT 78063 Query 46516 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 || | | | || ||| | | |||||| || | ||||| || ||||| ||||| || Sbjct 78062 GATGTTTTCAATGGTATCGTTTGCTTCCACCTCGAGTGTGATAGTCTTGCCAGTCAGAGT 78003 Query 46576 TTTAACAAAGATTTGCAT 46593 ||| || ||||| ||||| Sbjct 78002 TTTGACGAAGATCTGCAT 77985 Score = 104 bits (114), Expect = 3e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || || || | || || || || || || |||||||| || || |||||| | Sbjct 77971 CGCAGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCA 77912 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| |||||||| || | ||||||||||| | || | | |||||| Sbjct 77911 TCCTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTG 77852 Query 46499 TCCATGATCTTCT-TCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 | | ||| ||| | ||||| | | | || ||| | | |||||| || | ||||| Sbjct 77851 T-CTTGAACTTTTGCCTTGATGTTTTCAATGGTATCGTTTGCTTCCACCTCAAGGGTGAT 77793 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || |||| ||||| || ||||| ||||| Sbjct 77792 GGTCTTACCAGTCAAAGTTTTGACGAAGATCTGCAT 77757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565233503622360