Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq531 203 3e-47 seq171 197 1e-45 seq2 107 2e-18 >seq531 Length=50098 Score = 203 bits (224), Expect = 3e-47 Identities = 408/603 (68%), Gaps = 8/603 (1%) Strand=Plus/Minus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 ||||| ||||| || ||||| ||||| || | ||||||||| ||||| ||||| || || Sbjct 47734 CAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAAA 47675 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || ||||| | || || || |||||||| || || || |||||| || |||||| Sbjct 47674 CCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAAG 47615 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | ||||| || || ||||| | || || | ||| |||||| | || || | Sbjct 47614 ATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGAATTA--- 47558 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTC 133134 ||||| | ||||||| ||||| | | || ||||| || || || || ||||| Sbjct 47557 ATCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTG 47498 Query 133135 AACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATT 133194 || | | || ||| | | | || |||||||| ||| | |||||||| Sbjct 47497 AAGAGCCTTGCCTTATCTGCTTGGTTCTTGATATACGTGTCGATCAGGATGGAATACATC 47438 Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254 |||||||| | || || || |||||||| || || |||||||| || | || | | | Sbjct 47437 TCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGATC 47378 Query 133255 TGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCG 133314 || | || | ||| || | | ||||| || ||| || || || || ||| Sbjct 47377 TGAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTGCG 47318 Query 133315 AAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC----GCTCCCA 133370 ||||| ||||| |||||||||||||| || ||||||| |||||| |||| ||||| Sbjct 47317 AAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTT-AAGCTTGTCTTCCCA 47259 Query 133371 GTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTT 133430 || || | ||| ||||| || || || || ||||||||||| ||||| |||| Sbjct 47258 TTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCTTC 47199 Query 133431 TTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTT 133490 |||||| | |||| || || | ||| | || ||||| | ||| | | | ||||| Sbjct 47198 TTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGGGTT 47139 Query 133491 TTC 133493 ||| Sbjct 47138 TTC 47136 >seq171 Length=86538 Score = 197 bits (218), Expect = 1e-45 Identities = 407/603 (67%), Gaps = 8/603 (1%) Strand=Plus/Minus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 ||||| ||||| || ||||| ||||| || | ||||||||| ||||| ||||| || || Sbjct 4748 CAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAAA 4689 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || ||||| | || || || |||||||| || || || |||||| || |||||| Sbjct 4688 CCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAAG 4629 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | ||||| || || ||||| | || || | ||| |||||| | || || | Sbjct 4628 ATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGAATTA--- 4572 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTC 133134 ||||| | ||||| | ||||| | | || ||||| || || || || ||||| Sbjct 4571 ATCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTG 4512 Query 133135 AACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATT 133194 || | | || ||| | | | || |||||||| ||| | |||||||| Sbjct 4511 AAGAGCCTTGCCTTATCTGCTTGGTTCTTGATATACGTGTCGATCAGGATGGAATACATC 4452 Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254 |||||||| | || || || |||||||| || || |||||||| || | || | | | Sbjct 4451 TCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGATC 4392 Query 133255 TGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCG 133314 || | || | ||| || | | ||||| || ||| || || || || ||| Sbjct 4391 TGAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTGCG 4332 Query 133315 AAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC----GCTCCCA 133370 ||||| ||||| |||||||||||||| || ||||||| |||||| |||| ||||| Sbjct 4331 AAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTT-AAGCTTGTCTTCCCA 4273 Query 133371 GTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTT 133430 || || | ||| ||||| || || || || ||||||||||| ||||| |||| Sbjct 4272 TTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCTTC 4213 Query 133431 TTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTT 133490 |||||| | |||| || || | ||| | || ||||| | ||| | | | ||||| Sbjct 4212 TTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGGGTT 4153 Query 133491 TTC 133493 ||| Sbjct 4152 TTC 4150 >seq2 Length=132159 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || ||||| || ||||| |||| || || || | | Sbjct 77985 ATGCAGATCTTCGTCAAAACTCTGACTGGCAAGACTATCACACTCGAGGTGGAAGCAAAC 78044 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | || | |||| | | ||||| || ||||| || | ||||| Sbjct 78045 GATACCATTGAAAACATCAAGGCAAAAGTTCAAGACAAGGAAGGAATCCCACCAGACCAG 78104 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||||| ||| || || ||||| || || | |||||| || ||||||||| Sbjct 78105 CAGCGACTCATTTTCGCCGGAAAGCAGCTCGAGGATGGGCGCACGCTGTCAGACTACAAC 78164 Query 38424 ATCCA-AAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || |||| |||| || || || | || || || || |||| || Sbjct 78165 ATTCAGAAAGAAAGC-ACCCTTCACCTCGTTCTTCGGCTGCGAGGAGG 78211 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || || || ||||||||| | || || || || | | Sbjct 77757 ATGCAGATCTTCGTCAAAACTTTGACTGGTAAGACCATCACCCTTGAGGTGGAAGCAAAC 77816 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | || | |||| | | ||||| || ||||| || | ||||| Sbjct 77817 GATACCATTGAAAACATCAAGGCAAAAGTTCAAGACAAGGAAGGAATCCCACCAGACCAG 77876 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||||| ||| || || ||||| || || | |||||| || ||||||||| Sbjct 77877 CAGCGACTCATTTTCGCCGGAAAGCAGCTCGAGGATGGGCGCACGCTGTCAGACTACAAC 77936 Query 38424 ATCCA-AAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || |||| |||| || || || | || ||||| || | || ||| Sbjct 77937 ATTCAGAAAGAAAGC-ACCCTTCACCTCGTTCTGCGGCTGCGTGGTGGC 77984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500168467253120