Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq254 159 4e-34 seq531 102 1e-16 seq171 102 1e-16 seq243 95.1 2e-14 >seq254 Length=68440 Score = 159 bits (176), Expect = 4e-34 Identities = 1113/1762 (63%), Gaps = 68/1762 (4%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||||||||| ||||||| ||||| |||| || || | | | ||| Sbjct 32698 CCACAGTACATGCTCATGCGCGTCGCCCTCGGAATTCACTCCACAAACCTACCACGGGTT 32639 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 || ||||| || || | | || | || ||||||| || || || || || |||| | Sbjct 32638 TTCGAGACGTATGAGTATCTCTCGCAGGGAATGTTCACACATGCGACCCCCACGCTCTAC 32579 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 || || || || ||| | || || ||| |||||| ||||| | || ||| || ||| Sbjct 32578 AATGCCGGCACCCCACGCCCGCAGATGAGCAGTTGCTTCCTGCTGGCGCTCAAAGATGAT 32519 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || ||| | || ||||||| || |||| |||||| | ||||| ||| |||| Sbjct 32518 TCGATCGAAGGTATTTACGATACGCTCAAGACATGTGCGCTCATCTCGAAGAACAGTGGT 32459 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGA-GC-CAACAAGTCTCGTATTAGAGGTACAA 111909 || || || |||| | || | | || || | ||| | ||| | || |||| Sbjct 32458 GGCATTGGCTTGCATGTTCACAACATTCGAAGCTCTGGAAGCTAC--ATTCGCGGGACAA 32401 Query 111910 ATGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 |||| |||| |||| || | || ||||| || || || |||| ||| || ||||| Sbjct 32400 ATGGGG--TCAGTAATGGAATAGTCCCCATGCTGCGAGTCTTCAACGACACTGCCCGCTA 32343 Query 111968 TGTAAACCAAGCTGGGCGT---CGCAAGGG-ATCTATCGCAGTCTATCTTGAGCCATGGC 112023 || |||||| || | ||||| || | || | || |||| |||||||| |||| Sbjct 32342 CGTCGACCAAGGAGGTGGAAAGCGCAAAGGCAGCTTTGCCA-TCTACCTTGAGCCGTGGC 32284 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 |||| ||||| ||||| || | | || ||| || | |||||| ||| Sbjct 32283 ACGCTGATATTATGGATTTTTTGAACCTGAAGAAGAACACCGGCAAGGAGGAGATTCGGG 32224 Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG-GAG 112142 | || ||||||| || ||||||||| || || |||||||||||| |||| || || Sbjct 32223 CGAGAGACCTCTTCTACGGTCTCTGGATCCCCGACCTCTTCATGAAGCGAGTGCAGCGAA 32164 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202 || | ||| ||| | || || ||| | | || || || ||| ||||| | ||| Sbjct 32163 AG-GCCAAATGGACACTTTTCGATCCCAAAACAGCCCCTGGGCTCGCCGATTGCTGGGGC 32105 Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTG 112262 | || || || ||||| |||||||| | || | | | | |||| || Sbjct 32104 GCTGAATTCGAGAGTCTCTATGAGCAGTACGAGAAGGATAATAAAGGGTACAAGACGATG 32045 Query 112263 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322 || ||| | ||| || || | | | || | |||||| || || || ||| Sbjct 32044 GACGCACAAGATCTCTGGTTCGCCATCATTGAAGCGCAGATCGAGACGGGAACGCCGTAT 31985 Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382 |||| |||||||| || || |||| ||| || || | || | || ||||| Sbjct 31984 TTGCTATACAAAGATGCATGCAACCGCAAGTCGAACCAGCAAAACCTTGGAACCATCAAA 31925 Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 112442 | || || || || || || ||| | || | || | ||||| || ||||| Sbjct 31924 TGCTCAAATCTGTGCACGGAGATCATCGAGTACACCGCACCGGATGAAGTCGCCGTGTGC 31865 Query 112443 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAA---GACATTTGAT 112499 |||||||| || |||| ||||| |||| | | | ||||||| ||||| || Sbjct 31864 AACCTCGCCTCCCTCGCGCTCCCAAAGTTCCTCAA--CGAAGACAAAACTGACATG-GAC 31808 Query 112500 TATGAAAAACTCCACGAAGT--TACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 ||||| || || | | | | |||| | | || | |||||| || || || | Sbjct 31807 TATGAGAAGCTTCGCAGAATCGTACGCATC--GCAACGAGAAACCTCAATCTCGTCATCG 31750 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 | | || |||||||| || || || || | || ||| | || || || || | Sbjct 31749 ACCGCAACTTTTACCCAGTGGAAGAGGCCCGACGAAGCAACATGCGGCATCGACCCATCG 31690 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTC-- 112675 | || || || || || || || ||||| | | | | | || |||||| |||| Sbjct 31689 GCCTTGGGGTGCAGGGACTTGCCGATGTCTACCT-CAATCTC----CGCATTCCATTCAC 31635 Query 112676 ---CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT 112732 || | | || ||| ||||| | |||||||| || || || |||||| || Sbjct 31634 GAGCGCCAAGGCCAAGCGCATCAACGAAGACATATTTGAAACCATCTACTTCGCCGCGCT 31575 Query 112733 TGAGGCGAGTTCGGAGTTGGCAGAG-GTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 112791 |||| || | | || ||| | ||||| || |||||||| | |||| || Sbjct 31574 GGAGGAAAGCTGTCTCATCGC-GAGTGAGGATGGCCCGTATGAAACGTACCAGGGAAGTC 31516 Query 112792 CAGCTTCACAAGGGG-TGCTTCAATTTGATATGTGGGAAGGTGAGACCAA---GCTT-CA 112846 ||| | |||||| | || || | || |||||||| | ||| || | || | Sbjct 31515 CAG-TGAGCAAGGGAATCCTCCAGTACGACATGTGGGACG-TGACGCCGAAGAGCGGGCG 31458 Query 112847 CTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 112906 | ||||||| | | ||| ||||||| | || | || | || || ||||| | Sbjct 31457 ATGGGACTGGGCGGAATTGAAGTCCCGCATCATGAAGCATGGCGTCCGAAATAGTCTCCT 31398 Query 112907 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 112966 ||||||| ||||| || ||| ||| ||||| ||||| || || || |||||||| Sbjct 31397 TGTGGCACCTATGCCGACTGCCAGCACGAGTCAAATATTGGGAAACAACGAGTGCTTTGA 31338 Query 112967 ACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 113026 || ||||||| ||||| |||||| | || |||| || ||||| | ||||| Sbjct 31337 GCCATACACGAGCAACATGTATCTGCGCCGAGTCCTCAGTGGTGAGTTCCCAGTCGTCAA 31278 Query 113027 CAAGCATCTCGT---GGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATG----- 113078 | || || |||| || | ||| || || ||| || || | | Sbjct 31277 TCGGTGCCTTGTCAGGGATTTGATCCAGGAG---GGCCTGTGG---AATGAGACGTCCCG 31224 Query 113079 -AAGGATCTCATGGTGAA-AGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATG 113136 || ||||| | || | ||| | | | ||| | |||| || | | | |||| Sbjct 31223 AAATACACTCATCGCCAACAACGGCAG----CGTGCAACACATTGAGGGTCTCCGCGATG 31168 Query 113137 AAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGG 113196 | | ||| || | ||||| || || |||||||||||| ||||| | || || |||| Sbjct 31167 AGCTCAAGGAGATATACCGAACTGTGTGGGAAATCAAGCAAAAGGACATTATCGATATGG 31108 Query 113197 CCGCAGATCGTGGTCG--CTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAG 113254 | || || || ||||| || ||||| ||||| || || ||||||| ||| | || Sbjct 31107 CGGC-GA-CGCGGTCGGCCTATATTGACCAAAGCCATAGCTTGAATCTTTTCCTCGAGTC 31050 Query 113255 TCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAAC 113314 ||||||| |||| ||| | || |||||| | ||| | ||||| || || || || Sbjct 31049 GCCAACGAGCTCCACGCTGACATCGATGCACTTTTACGGCTGGAAACGTGGACTGAAGAC 30990 Query 113315 GGGGATGTATTACCTCCGATCT 113336 ||||| || || || || ||| Sbjct 30989 AGGGATCTACTATCTGCGGTCT 30968 >seq531 Length=50098 Score = 102 bits (112), Expect = 1e-16 Identities = 186/269 (69%), Gaps = 9/269 (3%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCA--GCTCTTTGAAGCCATCC 102105 || || |||| |||||| ||| | || || ||| ||| |||||| | || || Sbjct 47451 CTGATCGACACGTATATCAAGAACCAAGCAGATAAG--GCAAGGCTCTTCAACGCTATGG 47508 Query 102106 AAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAA-AG 102164 | || |||| ||| |||| |||| || | ||||| || || ||| || || || || Sbjct 47509 AGACTATTCCGTGTGTTCAGCAGAAGGCTCAATGGGCAATTAAATGGATTAATTCAGCAG 47568 Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 | ||||| || || |||| ||| || || ||| ||||| ||||||||| | Sbjct 47569 ACTCGTTC----GCCGAAAGACTTGTCGGGTTCGCAGCTGTGGAGGGAATCTTCTTCAGT 47624 Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 || ||||| || |||| ||||||||||||||||| | ||||||||| | |||| Sbjct 47625 GGAAGTTTCTGTGCAATTTTCTGGCTCAAGAAGCGAGGATTAATGCCAGGTTTAACCTTC 47684 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||||| || || ||||| ||||| Sbjct 47685 AGTAACGAGCTCATTTCCCGTGATGAGGG 47713 >seq171 Length=86538 Score = 102 bits (112), Expect = 1e-16 Identities = 186/269 (69%), Gaps = 9/269 (3%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCA--GCTCTTTGAAGCCATCC 102105 || || |||| |||||| ||| | || || ||| ||| |||||| | || || Sbjct 4465 CTGATCGACACGTATATCAAGAACCAAGCAGATAAG--GCAAGGCTCTTCAACGCTATGG 4522 Query 102106 AAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAA-AG 102164 | || |||| ||| |||| |||| || | ||||| || || ||| || || || || Sbjct 4523 AGACTATTCCGTGTGTTCAGCAGAAGGCTCAGTGGGCAATTAAATGGATTAATTCAGCAG 4582 Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 | ||||| || || |||| ||| || || ||| ||||| ||||||||| | Sbjct 4583 ACTCGTTC----GCCGAAAGACTTGTCGGGTTCGCAGCTGTGGAGGGAATCTTCTTCAGT 4638 Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 || ||||| || |||| ||||||||||||||||| | ||||||||| | |||| Sbjct 4639 GGAAGTTTCTGTGCAATTTTCTGGCTCAAGAAGCGAGGATTAATGCCAGGTTTAACCTTC 4698 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||||| || || ||||| ||||| Sbjct 4699 AGTAACGAGCTCATTTCCCGTGATGAGGG 4727 >seq243 Length=69200 Score = 95.1 bits (104), Expect = 2e-14 Identities = 556/876 (63%), Gaps = 23/876 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || || |||||| | ||||||| |||||||| ||||| | ||| |||| | || Sbjct 21565 CCTCAATACATGCTTTTGCGGGTTGCGATCGGAATCCACGCACCTGATTTTGAAGCAGT- 21623 Query 111672 TTGGAGACATA-CGACAAGATG-TC-CCGTGGTATG-TTCATCCACGCAACACCAACCCT 111727 || | | | | |||| || || ||| | ||| || | ||||| |||||||| || Sbjct 21624 ---GAAAGAAAGCTACAAATTGCTCTCCGAAGGATGGTTTACGCACGCGACACCAACGCT 21680 Query 111728 CTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787 || || || ||||| || | ||| || ||| || |||||| | ||||| | |||||| Sbjct 21681 GTTTAATGCAGGTACTCCGAAACCTCAGATGAGTAGCTGTTTCTTAATTGCGACCAAGGA 21740 Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847 || || || || || | || ||| || |||||| | ||| || | ||| Sbjct 21741 AGACTCTATACCAGGAATATTCGACACACTGCGAACATGTGCGCTTATCAGCAAATCGGC 21800 Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAAC--AAGTCTCGTATTAGAGGT 111905 || || ||||| | ||| | || || || | || |||| | || || Sbjct 21801 CGGAGGAATCGGCCTACACGTGCACGACATCCGCGCATGTGGAAGTTAC--ATCGCTGGA 21858 Query 111906 ACAAATGGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 111964 || ||||| | | || |||| || ||||||||||||| || || || | || || || Sbjct 21859 ACCAATGGAACGAGCA-ATGGGCTTGTTCCAATGCTTCGTGTTTTCAATGATACGGCACG 21917 Query 111965 CTATGTAAACCAAGCTGGGCGTC---GCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 ||||| |||||| ||| | | || || | | ||| ||||| | || || || Sbjct 21918 ATATGTTGACCAAGGTGGTGGCAAAAGAAAAGGTGCATTTGCAATCTATGTAGAACCCTG 21977 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAG--GCG 112079 ||| || ||||| | || || || | | | ||| || | || || ||| Sbjct 21978 GCATGCAGATATTTTCGAATTTCTCACGCTCAAGCGAAACACCGGGAAAGAAGAAATGCG 22037 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || | || |||||||| | | ||||||||||||||| | || |||||| | || | Sbjct 22038 CGCT--CGTGATCTCTTTTATGGACTCTGGATTCCAGATTTGTTTATGAAGCGTGTGCAA 22095 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGT 112198 | || || ||| | || || || | | || || || ||| | || ||| | Sbjct 22096 AAATCAGGGAACTGGACACTTTTCGACCCTAATATTGCTCCAGGCCTCGCTGACTGCTAT 22155 Query 112199 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGAC 112258 || || ||||||||| | ||| | || || ||| | ||| || || Sbjct 22156 GGA-GAAGAGTTTGAAAAATTATACGAGCAATATGAACGTGAAGGCAGGGGAACGAAAAC 22214 Query 112259 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 || | || || | ||| || || |||| || | || || ||||| || Sbjct 22215 AGTCACGGCGCAAGAGCTCTGGTTCCAAATCATCGAGTCCCAGATAGAAACCGGTACCCC 22274 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 || |||||||| || ||||| ||||| ||||| ||||| ||||||||||| ||| Sbjct 22275 GTACATGCTTTATAAGGACGCATGTAATGAAAAGTCCAATCAGAAGAATTTGGGCACGAT 22334 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 |||| || |||||| || || |||||| | |||| |||| | || ||| || || Sbjct 22335 CAAGTGTAGCAACCTGTGCACTGAAATCGTCGAATATACATCCCCTGACGAGGTTGCCGT 22394 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 112474 || || ||||| || || | || || | || ||| Sbjct 22395 CTGCAATCTCGCGTCGATTTCCCTTCCGATGTTTGT 22430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620737022818960