Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq254 132 6e-26 seq243 109 6e-19 >seq254 Length=68440 Score = 132 bits (146), Expect = 6e-26 Identities = 666/1047 (64%), Gaps = 23/1047 (2%) Strand=Plus/Plus Query 110101 ACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGA 110160 ||||| || || ||||| || || || || ||||| |||||| |||||| ||||| Sbjct 31662 ACATCGGCAAGTCCCTGCACCCCAAGGCCGATGGGTCGATGCCGCATGTTGCTTCGTCGG 31721 Query 110161 GCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTC 110220 || ||| || ||||||||||||||||||||||| ||||||| || |||| | Sbjct 31722 GCCTCTTCCACTGGGTAAAAGTTGCGGTCGATGACGAGATTGAGGTTTCTCGTTGC--GA 31779 Query 110221 TTCGT--GATTTCATGGAGTTTGTCGTAATCGA--ACGTTTTCGTCTCCTTATTGACATA 110276 | ||| |||| | || || || || || | | ||| |||| | |||| | Sbjct 31780 TGCGTACGATTCTGCGAAGCTTCTCATAGTCCATGTCAGTTTTGTCT--TCGTTGAGGAA 31837 Query 110277 TTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTC 110336 || ||||| || | || || || |||||||| | || || ||||||| || Sbjct 31838 CTTTGGGAGCGCGAGGGAGGCGAGGTTGCACACGGCGACTTCATCCGGTGCGGTGTACTC 31897 Query 110337 CAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTT 110396 | || ||||| |||| || || | || ||| || | ||| | ||| ||||| || Sbjct 31898 GATGATCTCCGTGCACAGATTTGAGCATTTGATGGTTCCAAGGTTTTGCTGGTTCGACTT 31957 Query 110397 GGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAG 110456 | |||||||||||| || || |||| || || || || || || |||| | | | Sbjct 31958 GCGGTTGCATGCATCTTTGTATAGCAAATACGGCGTTCCCGTCTCGATCTGCGCTTCAAT 32017 Query 110457 AATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTA 110516 ||||| ||| | ||| ||| | || || | | |||| |||||| Sbjct 32018 GATGGCGAACCAGAGATCTTGTGCGTCCATCGTCTTGTACCCTTTATTATCCTTCTCGTA 32077 Query 110517 CTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTC 110576 || || | ||| ||||| || | ||| | || || || | | Sbjct 32078 CTGCTCATAGAGACTCTCGAATTCAGCGCCCCAGCAATCGGCGAGCCCAGGGGCTGTTTT 32137 Query 110577 GGGACAGAAGAGGGACCAATTTCCACCCTC-CTCAACCCTCTTCATGAACAGGTCAGGAA 110635 |||| ||| || | || |||| | || || || | ||||||||| ||||| || | Sbjct 32138 GGGATCGAAAAGTGTCC-ATTTGGCCTTTCGCTGCACTCGCTTCATGAAGAGGTCGGGGA 32196 Query 110636 TCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTA 110695 |||| | | |||| ||||| | ||| ||| || | || ||| | Sbjct 32197 TCCAGAGACCGTAGAAGAGGTCTCTCGCCCGAATCTCCTCCTTGCCGGTGTTCTTCTTCA 32256 Query 110696 GCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCT 110755 | | |||||| ||||| ||||| | |||||| || || || |||| || | | || | Sbjct 32257 GGTTCAAAAAATCCATAATATCAGCGTGCCACGGCTCAAGGTAGATGGCAAAGCTGCCTT 32316 Query 110756 TACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAG 110812 | || | ||| | |||| || ||||| || ||| | |||||||| | ||||| | Sbjct 32317 TGCGCTTTCCACCTCCTTGGTCGACGTAGCGGGCAGTGTCGTTGAAGACTCGCAGCATGG 32376 Query 110813 GAATAATTCCATCGGATTGA--CCATTTGTACCCCTAATTCTGGACTT--ATTGGCACGA 110868 | | ||||||| | ||| |||||||| || | ||| | ||| | | ||| Sbjct 32377 GGACTATTCCAT--TACTGACCCCATTTGTCCCGCGAATGTAG--CTTCCAGAGCTTCGA 32432 Query 110869 ATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGT 110927 |||| ||| | ||||| ||||| ||||| ||| || | ||||| ||| | Sbjct 32433 ATGTTGTGAACATGCAAGCCAATGCCACCACTGTTCTTCGAGATGAGCGCACATGTCT-T 32491 Query 110928 GAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGA 110987 ||| ||| | |||||||| || |||||||| | ||| || | || |||||| Sbjct 32492 GAGCGTATCGTAAATACCTTCGATCGAATCATCTTTGAGCGCCAGCAGGAAGCAACTGCT 32551 Query 110988 CATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACC 111047 |||||| || || || || || |||||| |||| || || |||||||| |||||| || Sbjct 32552 CATCTGCGGGCGTGGGGTGCCGGCATTGTAGAGCGTGGGGGTCGCATGTGTGAACATTCC 32611 Query 111048 TTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAAT 111107 || || | | | || || |||| | |||| | | | |||||| || | Sbjct 32612 CTGCGAGAGATACTCATACGTCTCGAAAACCCGTGGTAGGTTTGTGGAGTGAATTCCGAG 32671 Query 111108 GGCAACTCGCATGAACATATATTGAGG 111134 ||| || ||||||| ||| || || || Sbjct 32672 GGCGACGCGCATGAGCATGTACTGTGG 32698 >seq243 Length=69200 Score = 109 bits (120), Expect = 6e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 110266 TTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTG 110325 || |||||| | | || || | ||| ||||| |||||||| || | | |||||| | Sbjct 22436 TTCTTGACAAACATCGGAAGGGAAATCGACGCGAGATTGCAGACGGCAACCTCGTCAGGG 22377 Query 110326 TCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTC 110385 || ||||| | ||||| || |||| |||| || ||| || ||||| |||||| Sbjct 22376 GATGTATATTCGACGATTTCAGTGCACAGGTTGCTACACTTGATCGTGCCCAAATTCTTC 22317 Query 110386 TGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTC 110445 ||||| || || || ||||| |||||||| |||||||| |||||||| ||||| || Sbjct 22316 TGATTGGACTTTTCATTACATGCGTCCTTATAAAGCATGTACGGGGTACCGGTTTCTATC 22257 Query 110446 TGTGACTTGA 110455 || |||| || Sbjct 22256 TGGGACTCGA 22247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588970897995400