Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq254 190 2e-43 seq243 100 3e-16 >seq254 Length=68440 Score = 190 bits (210), Expect = 2e-43 Identities = 1122/1771 (63%), Gaps = 84/1771 (5%) Strand=Plus/Plus Query 105586 AGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGA 105645 ||| || |||||||| ||||| ||||| ||||| ||||||| |||| | ||||| || Sbjct 30968 AGACCGCAGATAGTAGATCCCTGTCTTCAGTCCACGTTTCCAGCCGTAAAAGTGCATCGA 31027 Query 105646 AGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAAT 105705 | ||| |||| ||||||| || | ||||||||||| || || || |||||||| Sbjct 31028 TGTCAGCGTGGAGCTCGTTGGCGACTCGAGGAAAAGATTCAAGCTATGGCTTTGGTCAAT 31087 Query 105706 GAAG--CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACT 105763 || ||||| ||| ||||||||||| || | ||||| ||||||||||||||| Sbjct 31088 ATAGGCCGACCGCGT--CGCCGCCATATCGATAATGTCCTTTTGCTTGATTTCCCACACA 31145 Query 105764 GTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCC 105823 || ||||| | | ||||| ||||| ||| | | || | ||| | | | Sbjct 31146 GTTCGGTATATCTCCTTGAGCTCATCGCGGAGACCCTCAATGTGTTG-------CACGCT 31198 Query 105824 GCC----TTGACCATGAGATCCTT------CATATCCTTGGACCAAAGACCAATCTTCTT 105873 ||| ||| | ||||| || | | || || ||| || || || | Sbjct 31199 GCCGTTGTTGGCGATGAGTGTATTTCGGGACGTCTCATT---CCACAGGCCCTCCTGGAT 31255 Query 105874 GAGATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAG 105933 | ||| |||| || | ||||| | ||||| || |||| || | ||| Sbjct 31256 CAAATCCCTGACAAGGCACCGATTGACGACTGGGAACTCACCACTGAGGACTCGGCGCAG 31315 Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 ||| ||||| ||||||| || |||||||| || || || ||||| ||||| ||| Sbjct 31316 ATACATGTTGCTCGTGTATGGCTCAAAGCACTCGTTGTTTCCCAATATTTGACTCGTGCT 31375 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053 ||| || ||||| ||||||| | ||||| || || | || | | | ||||||| Sbjct 31376 GGCAGTCGGCATAGGTGCCACAAGGAGACTATTTCGGACGCCATGCTTCATGATGCGGGA 31435 Query 106054 CTTGAGAACATCCCAGTCGTA---GTTGAGCTT-GGTTTCACCTTCCCACATATCAAATT 106109 ||| | | ||||||| | | ||| || ||| | |||||||| || | | Sbjct 31436 CTTCAATTCCGCCCAGTCCCATCGCCCGCTCTTCGGCGTCA-CGTCCCACATGTCGTACT 31494 Query 106110 GAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCA- 106168 | || | || | | | ||| |||| | || ||||| | || | | ||| Sbjct 31495 GGAGGATTCCCTTGCTCACTGGACTTCCCTGGTACGTTTCATACGGGCCAT---CCTCAC 31551 Query 106169 --GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCAT 106226 || | |||||| ||||||| | ||| || ||||||||||| || | | Sbjct 31552 TCGCGATGAGACAGCTTTCCTCCAGCGCGGCGAAGTAGATGGTTTCAAATATGTCTTCGT 31611 Query 106227 TCATCTCCTTGGCTT-----CATCTGAATCAAATGCGTAGCGGCACAAAATAA---ATAC 106278 | || |||||| | | ||||| |||||| || | | | | || Sbjct 31612 TGATGCGCTTGGCCTTGGCGCTCGTGAATGGAATGCGGAG--------ATTGAGGTAGAC 31663 Query 106279 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTT--TCGC 106336 ||| || || || || || || | || || |||| || ||||| || ||| ||| Sbjct 31664 ATCGGCAAGTCCCTGCACCCCAAGGCCGATGGGTCGATGCCGCATGTT--GCTTCGTCGG 31721 Query 106337 GCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 106396 || || || || ||||| || | ||| ||||| | || || ||| | || | || Sbjct 31722 GCCTCTTCCACTGGGTAAAAGTTGCGGTCGATGACGAGATTGAGGTTTCTCGTTGCGATG 31781 Query 106397 TTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAG---TCTCTTCATTGACATAC 106453 | |||| |||| || ||||| || | || || | ||||| |||| || Sbjct 31782 CGTACGATTCTGCGAAGCTTCTCATAGTCCA---TGTCAGTTTTGTCTTCGTTGAGGAAC 31838 Query 106454 TTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCT 106513 ||||| || |||| || || | ||||| || || |||||| | |||||||| Sbjct 31839 TTTGGGAGCGCGAGGGAGGCGAGGTTGCACACGGCGACTTCATCCGGTGCGGTGTACTCG 31898 Query 106514 AAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTT 106573 | || || || |||| || || | || || || || | || | ||||| ||| Sbjct 31899 ATGATCTCCGTGCACAGATTTGAGCATTTGATGGTTCCAAGGTTTTGCTGGTTCGACTTG 31958 Query 106574 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGA 106633 |||||| ||||| ||||| |||| || ||||| |||||||| |||| | | | Sbjct 31959 CGGTTGCATGCATCTTTGTATAGCAAATACGGCGTTCCCGTCTCGATCTGCGCTTCAATG 32018 Query 106634 ATTGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCCGT--CCCTCCGCCTCGT 106691 || || ||| | ||| || || || | | | ||| | ||| ||||| Sbjct 32019 ATGGCGAACCAGAGATCTTGTGC--GTCCATCGTCTTGTACCCTTTATTATCCTTCTCGT 32076 Query 106692 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTG 106750 ||| ||||| || || || | ||| | || |||| ||| || || || | Sbjct 32077 ACTGCTCATAGAGACTCTCGAATTCAGCGCCC-CAGCAATCGGCGAGCCCAGGGGCTGTT 32135 Query 106751 TCTGGACAGAAAAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGG 106809 | ||| |||||| | ||| ||| || | || || ||||||||||| ||||| || Sbjct 32136 TTGGGATCGAAAAGTGTCCATTTGGCCTTTC-GCTGCACTCGCTTCATGAAGAGGTCGGG 32194 Query 106810 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 106869 ||||| || | ||||| ||||| |||| ||| || | || ||| || Sbjct 32195 GATCCAGAGACCGTAGAAGAGGTCTCTCGCCCGAATCTCCTCCTTGCCGGTGTT-CTTCT 32253 Query 106870 TAA--CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGAT 106927 | | |||| || ||||| ||||| |||||||| |||||||| |||| || | || | Sbjct 32254 TCAGGTTCAA-AAAATCCATAATATCAGCGTGCCACGGCTCAAGGTAGA-TGGCAAAGCT 32311 Query 106928 CCCTTT-CG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 106983 ||||| || | || |||| | || ||||| || ||| |||| || || || || Sbjct 32312 GCCTTTGCGCTTTCCACCTCCTTGGTCGACGTAGCGGGCAGTGTCGTTGAAGACTCGCAG 32371 Query 106984 CATTGGAATAATACCAT--CTGATTGACCATTTGTCCCCCGAATACGAGATT-TATTGGC 107040 ||| || | || |||| |||| ||||||||||| ||||| || || | | Sbjct 32372 CATGGGGACTATTCCATTACTGA--CCCCATTTGTCCCGCGAAT-GTAGCTTCCAGAGCT 32428 Query 107041 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 107100 || | | || | |||| ||||| || ||| ||| ||||| ||||||| Sbjct 32429 TCGAATGTTGTGAACATGCAAGCCAATGCCACCACTGTTCTTCGAGATGAGCGCACATGT 32488 Query 107101 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACT 107160 | | || || | || ||||| | ||| || || || ||| || | ||||||||||| Sbjct 32489 CTTGAGCGTATCGTAAATACCTTCGATCGAATCATCTTTGAGCGCCAGCAGGAAGCAACT 32548 Query 107161 GGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACAT 107220 | ||||||||| | ||| || || |||||| |||| || || || || || ||||||| Sbjct 32549 GCTCATCTGCGGGCGTGGGGTGCCGGCATTGTAGAGCGTGGGGGTCGCATGTGTGAACAT 32608 Query 107221 ACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 107280 || || || | | || || ||||| || || | || | ||| || || Sbjct 32609 TCCCTGCGAGAGATACTCATACGTCTCGAAAACCCGTGGTAGGTTTGTGGAGTGAATTCC 32668 Query 107281 GATGGCCACACGCATAAACATGTATTGGGGT 107311 || ||| || ||||| | |||||| || ||| Sbjct 32669 GAGGGCGACGCGCATGAGCATGTACTGTGGT 32699 >seq243 Length=69200 Score = 100 bits (110), Expect = 3e-16 Identities = 558/881 (63%), Gaps = 13/881 (1%) Strand=Plus/Minus Query 106445 TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT 106504 |||||| || | ||||||| || || || | |||||| || || ||| || | Sbjct 22433 TTGACAAACATCGGAAGGGAAATCGACGCGAGATTGCAGACGGCAACCTCGTCAGGGGAT 22374 Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 || || || | ||||| || |||| |||| || ||| ||||| ||||||||||| || Sbjct 22373 GTATATTCGACGATTTCAGTGCACAGGTTGCTACACTTGATCGTGCCCAAATTCTTCTGA 22314 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||||| || || || ||||| || |||||||| || || || || || |||| Sbjct 22313 TTGGACTTTTCATTACATGCGTCCTTATAAAGCATGTACGGGGTACCGGTTTCTATCTGG 22254 Query 106625 GACTTGAGAATTGCCTTCCACACATC-GGCGGCTGGTACAATGGCGTTGGCCCGTCCCTC 106683 |||| || ||| ||| | || ||| | | | |||| ||| | ||| Sbjct 22253 GACTCGATGATTTGGAACCAGAGCTCTTGCGCCGTGACTGTTTTCGTT--CCCCTGCCTT 22196 Query 106684 CGC-CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCT 106741 | | || || | ||| | ||||||||| || ||| || ||| | ||| ||| Sbjct 22195 CACGTTCATATTGCTCGTATAATTTTTCAAACTCTTC-TCCATAGCAGTCAGCGAGGCCT 22137 Query 106742 GGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAA 106801 || || | | || |||||| | ||| | || | | || |||||||| || Sbjct 22136 GGAGCAATATTAGGGTCGAAAAGTGTCCAGTTCCCTGATTTTTGCACACGCTTCATAAAC 22077 Query 106802 AGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGG 106861 | ||||||||||| || |||||||||| | | || ||||| | || | Sbjct 22076 AAATCTGGAATCCAGAGTCCATAAAAGAGATCACGAGCGCGCATTTCTTCTTTCCCGGTG 22017 Query 106862 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 106921 || | | | || || || | ||||| || ||||| || || | ||||| ||| Sbjct 22016 TTTCGCTTGAGCGTGAGAAATTCGAAAATATCTGCATGCCAGGGTTCTACATAGATTGCA 21957 Query 106922 ATAGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACG 106978 | | || |||| | ||| |||| | ||||| || || || | || || || Sbjct 21956 AATGCACCTTTTCTTTTGCCACCACCTTGGTCAACATATCGTGCCGTATCATTGAAAACA 21897 Query 106979 CGAAGCATTGGAATAATACCATCTGATTG-ACCATTTGTCCCCCGAATACGAGATTTATT 107037 ||||||||||||| || |||| || | | ||||| || || || | | | Sbjct 21896 CGAAGCATTGGAACAAGCCCAT-TGCTCGTTCCATTGGTTCCAGCGATGTAACTTCCACA 21838 Query 107038 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 107097 || | | || || | ||| | || || || || ||| | || ||| ||||||| Sbjct 21837 TGCGCGGATGTCGTGCACGTGTAGGCCGATTCCTCCGGCCGATTTGCTGATAAGCGCACA 21778 Query 107098 -CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGC 107156 | || || || | | || || || ||||| |||||| | || || | ||| | Sbjct 21777 TGTTCG-CAGTGTGTCGAATATTCCTGGTATAGAGTCTTCCTTGGTCGCAATTAAGAAAC 21719 Query 107157 AACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGA 107216 | || |||||| ||| | || ||||| ||||| || || |||||||| ||||| | | Sbjct 21718 AGCTACTCATCTGAGGTTTCGGAGTACCTGCATTAAACAGCGTTGGTGTCGCGTGCGTAA 21659 Query 107217 ACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 107276 || |||| ||| | | | ||| | || || | |||| || |||||| Sbjct 21658 ACCATCCTTCGGAGAGCAATTTGTAGCTTTCTTTCACTGCTTCAAAATCAGGTGCGTGGA 21599 Query 107277 TGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCC 107317 | ||||| || || |||| || ||||||||| ||| | ||| Sbjct 21598 TTCCGATCGCAACCCGCAAAAGCATGTATTGAGGTCTCTCC 21558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589975689291320