Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2 168 1e-36 >seq2 Length=132159 Score = 168 bits (186), Expect = 1e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || ||| |||||||| ||| ||||| ||||| ||||| || | || || | |||||| Sbjct 77969 CAGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATC 77910 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||||||||||| || ||||| || ||||| || |||||||| || || ||||| ||||| Sbjct 77909 CTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTC 77850 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| |||| ||||| ||| |||||||| || |||||| |||||||| | || Sbjct 77849 TTGAACTTTTGCCTTGATGTTTTCAATGGTATCGTTTGCTTCCACCTCAAGGGTGATGGT 77790 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || ||||||||||| ||||| | ||||| Sbjct 77789 CTTACCAGTCAAAGTTTTGACGAAGATCTGCAT 77757 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| |||||||| ||| ||||| ||||| ||||| || | || || | |||||| || Sbjct 78194 AACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCCTC 78135 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || ||||| || ||||| || |||||||| || || ||||| |||||||| Sbjct 78134 GAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTG 78075 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || |||| ||||| ||| |||||||| || |||||| || || || | ||||| Sbjct 78074 AACTTTTGCCTTGATGTTTTCAATGGTATCGTTTGCTTCCACCTCGAGTGTGATAGTCTT 78015 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| |||||| ||||| | ||||| Sbjct 78014 GCCAGTCAGAGTTTTGACGAAGATCTGCAT 77985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109471748843531