Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2 118 7e-22 >seq2 Length=132159 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | || || || ||| | ||||| |||||||||||||||||||| ||||| || Sbjct 77983 CCACCACGCAGCCGCAGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGAC 77924 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| |||||||| || || ||||| ||||||||| | || Sbjct 77923 AGCGTGCGCCCATCCTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGG 77864 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTG-TTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || |||||||| | | ||| || |||| | | | || | || || || || Sbjct 77863 ATTCCTTCCTTGTC-TTGAACTTTTGCCTTGATGTTTTCAATGGTATCGTTTGCTTCCAC 77805 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || || | ||| || || |||||||||||| Sbjct 77804 CTCAAGGGTGATGGTCTTACCAGTCAAAGTTTTGACGAAGATCTGCATA 77756 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || || | ||| | ||||| |||||||||||||||||||| ||||| || Sbjct 78211 CCTCCTCGCAGCCGAAGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGAC 78152 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| |||||||| || || ||||| ||||||||| | || Sbjct 78151 AGCGTGCGCCCATCCTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGG 78092 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTG-TTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || |||||||| | | ||| || |||| | | | || | || || || || Sbjct 78091 ATTCCTTCCTTGTC-TTGAACTTTTGCCTTGATGTTTTCAATGGTATCGTTTGCTTCCAC 78033 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || || || || || || ||||| || || ||||||||||| Sbjct 78032 CTCGAGTGTGATAGTCTTGCCAGTCAGAGTTTTGACGAAGATCTGCAT 77985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324630858164904