Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq531 179 4e-40 seq171 179 4e-40 seq243 131 2e-25 seq512 105 8e-18 >seq531 Length=50098 Score = 179 bits (198), Expect = 4e-40 Identities = 387/570 (68%), Gaps = 14/570 (2%) Strand=Plus/Minus Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || |||||||| ||||| | ||||| || || | |||||| || | | || |||| Sbjct 47683 AAGGTTAAACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCA 47624 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 ||||| || || || || ||||| || | || |||||||| | ||| || | Sbjct 47623 CTGAAGAAGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCG-AACGAGTCTGC 47565 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 | | || ||||||||| | |||||| | |||||||| | ||||| || || ||||| Sbjct 47564 TGA--ATTAATCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCC 47507 Query 19192 ATAGAATTAAATAGATACATACGCTCATCTGTATCTTTA---ACATATGCATCTATCAAT 19248 |||| || || || | | | || ||||| | || | ||| | || |||| Sbjct 47506 ATAGCGTTGAAGAGC--CTTGC-CTTATCTGCTTGGTTCTTGATATACGTGTCGATCAGG 47450 Query 19249 AAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTT 19308 | ||||| || || ||||||||||| || || || || || || ||||| || | Sbjct 47449 ATGGAATACATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGA 47390 Query 19309 GCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCA 19368 |||| | ||||| | || | || | | | | | ||| ||| ||||||||| Sbjct 47389 ACTTCAGCGATCTGAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCA 47330 Query 19369 TCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA- 19427 ||| ||||| |||||||| | || || || || || || || || | ||||| Sbjct 47329 TCAGATGCTGCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTC-GTCGTTAAG 47271 Query 19428 --TGTATTCCAAT-CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGA 19484 ||| |||| || | |||| ||||| || | ||||||||||||||||||||||| || Sbjct 47270 CTTGTCTTCCCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGA 47211 Query 19485 AGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 ||||||||||| ||| || | ||||| ||||| |||| | || ||||| | |||| | Sbjct 47210 AGCCTCTGCTTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATA 47151 Query 19545 TCTATTTTTATTTTCTTTAAGAATAGGTTC 19574 ||| || ||||||| ||| || || || Sbjct 47150 TCTGTTCGGGTTTTCTTGAAGCATTGGCTC 47121 >seq171 Length=86538 Score = 179 bits (198), Expect = 4e-40 Identities = 387/570 (68%), Gaps = 14/570 (2%) Strand=Plus/Minus Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || |||||||| ||||| | ||||| || || | |||||| || | | || |||| Sbjct 4697 AAGGTTAAACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCA 4638 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 ||||| || || || || ||||| || | || |||||||| | ||| || | Sbjct 4637 CTGAAGAAGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCG-AACGAGTCTGC 4579 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 | | || ||||||||| | |||||| | |||||||| | ||||| || || ||||| Sbjct 4578 TGA--ATTAATCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCC 4521 Query 19192 ATAGAATTAAATAGATACATACGCTCATCTGTATCTTTA---ACATATGCATCTATCAAT 19248 |||| || || || | | | || ||||| | || | ||| | || |||| Sbjct 4520 ATAGCGTTGAAGAGC--CTTGC-CTTATCTGCTTGGTTCTTGATATACGTGTCGATCAGG 4464 Query 19249 AAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTT 19308 | ||||| || || ||||||||||| || || || || || || ||||| || | Sbjct 4463 ATGGAATACATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGA 4404 Query 19309 GCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCA 19368 |||| | ||||| | || | || | | | | | ||| ||| ||||||||| Sbjct 4403 ACTTCAGCGATCTGAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCA 4344 Query 19369 TCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA- 19427 ||| ||||| |||||||| | || || || || || || || || | ||||| Sbjct 4343 TCAGATGCTGCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTC-GTCGTTAAG 4285 Query 19428 --TGTATTCCAAT-CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGA 19484 ||| |||| || | |||| ||||| || | ||||||||||||||||||||||| || Sbjct 4284 CTTGTCTTCCCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGA 4225 Query 19485 AGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 ||||||||||| ||| || | ||||| ||||| |||| | || ||||| | |||| | Sbjct 4224 AGCCTCTGCTTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATA 4165 Query 19545 TCTATTTTTATTTTCTTTAAGAATAGGTTC 19574 ||| || ||||||| ||| || || || Sbjct 4164 TCTGTTCGGGTTTTCTTGAAGCATTGGCTC 4135 >seq243 Length=69200 Score = 131 bits (144), Expect = 2e-25 Identities = 393/601 (65%), Gaps = 18/601 (3%) Strand=Plus/Minus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924 |||||| | ||| | || || || ||||| || || || ||||| | || ||| Sbjct 22430 ACAAACATCGGAAGGGAAATCGACGCGAGATTGCAGACGGCAACCTCGTCAGGGGATGTA 22371 Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA 47984 |||| | ||||||| || || || | ||| ||||| || |||||||| | ||||| Sbjct 22370 TATTCGACGATTTCAGTGCACAGGTTGCTACACTTGATCGTGCCCAAATTCTTCTGATTG 22311 Query 47985 TTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGAT 48044 | |||||||||||||| |||||||| | || || || ||||||||||| || Sbjct 22310 GACTTTTCATTACATGCGTCCTTATAAAGCATGTACGGGGTACCGGTTTCTATCTGGGAC 22251 Query 48045 TCAATGATAGATTTCCAAACAGTCCTA----GCCTTTATAACAGCTCTAGCTTTATTA-- 48098 || ||||| || || ||| || ||| | | | | | | | | | Sbjct 22250 TCGATGAT----TTGGAACCAGAGCTCTTGCGCCGTGA---CTGTTTTCGTTCCCCTGCC 22198 Query 48099 -TCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCC 48157 ||| |||| |||| ||||| || ||||| || || ||||| | | | | || Sbjct 22197 TTCACGTTCATATTGCTCGTATAATTTTTCAAACTCTTCTCCATAGCAGTCAGCGAGGCC 22138 Query 48158 AGGA-CATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTT-ACTCTAGTCATA 48215 ||| || | |||||| | | || ||| | | | | |||||| || | ||||| Sbjct 22137 TGGAGCAAT-ATTAGGGTCGAAAAGTGTCCAGTTCCC-TGATTTTTGCACACGCTTCATA 22080 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 || | |||||| ||||| || | ||| | ||| | || | | |||||| || || Sbjct 22079 AACAAATCTGGAATCCAGAGTCCATAAAAGAGATCACGAGCGCGCATTTCTTCTTTCCCG 22020 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 | || | || || ||||| || | ||||| |||||||| ||||||| ||| ||| Sbjct 22019 GTGTTTCGCTTGAGCGTGAGAAATTCGAAAATATCTGCATGCCAGGGTTCTACATAGATT 21960 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | | ||||| || ||| ||| ||||| || | ||||| || |||| || || Sbjct 21959 GCAAATGCACCTTTTCTTTTGCCACCACCTTGGTCAACATATCGTGCCGTATCATTGAAA 21900 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 || | | |||||| |||| ||||| | ||||||||||| | || ||||||||| Sbjct 21899 ACACGAAGCATTGGAACAAGCCCATTGCTCGTTCCATTGGTTCCAGCGATGTAACTTCCA 21840 Query 48456 C 48456 | Sbjct 21839 C 21839 >seq512 Length=1106 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 19434 CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||| || |||| ||||| || | ||||||||||||||||||||||| ||||||||||| Sbjct 1088 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAATGAAGCCTCTGC 1029 Query 19494 TTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTT 19553 || ||| || | ||||| ||||| |||| | || ||||| | |||| |||| || Sbjct 1028 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGG 969 Query 19554 ATTTTCTTTAAGAATAGGTTC 19574 ||||||| ||| || || || Sbjct 968 GTTTTCTTGAAGCATTGGCTC 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562103930732520