Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq531 127 2e-24 seq171 127 2e-24 >seq531 Length=50098 Score = 127 bits (140), Expect = 2e-24 Identities = 388/594 (65%), Gaps = 12/594 (2%) Strand=Plus/Minus Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234 ||| || || ||||| || || || ||||| | || | || ||| |||||||| Sbjct 47735 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 47676 Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAA 37294 ||||||||||| |||| || || | ||| || ||||| ||| |||| ||||| Sbjct 47675 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAA 47616 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAA--AGT-TGAACTATAATC 37351 || || || || ||||| || | ||||| | | |||| ||| || || | | Sbjct 47615 GATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTG--CTGAATT- 47559 Query 37352 AGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGC 37411 ||||||||| ||| ||| | ||||| | |||||| ||| || || || || Sbjct 47558 ---AATCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGC 47502 Query 37412 TTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATA 37471 || ||||| || ||| | | | ||||| || || || || | ||| Sbjct 47501 GTTGAAGAGCCTTGCCTTATCTGCTTGGTTCTTGATATACGTGTCGATCAGGATGGAATA 47442 Query 37472 CATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGA 37531 ||| || ||||||||||||||||| || || || ||||||||||| || | | |||||| Sbjct 47441 CATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGC 47382 Query 37532 TAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGC 37591 | |||| ||||| | || | || | || ||| ||||| |||||| || Sbjct 47381 GATCTGAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGC 47322 Query 37592 TGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT--TTGATAAT-TTTTT 37648 ||| || || || ||||| | || || || || | || || | || | | | || Sbjct 47321 TGCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTGTCTTC 47262 Query 37649 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGC 37708 ||| || |||| ||||| || | || ||||| ||||| |||||||| ||| ||| Sbjct 47261 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGC 47202 Query 37709 ACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCT 37762 ||| || || |||||||||| || | |||||||| | ||| |||| Sbjct 47201 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCT 47148 >seq171 Length=86538 Score = 127 bits (140), Expect = 2e-24 Identities = 388/594 (65%), Gaps = 12/594 (2%) Strand=Plus/Minus Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234 ||| || || ||||| || || || ||||| | || | || ||| |||||||| Sbjct 4749 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 4690 Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAA 37294 ||||||||||| |||| || || | ||| || ||||| ||| |||| ||||| Sbjct 4689 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAA 4630 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAA--AGT-TGAACTATAATC 37351 || || || || ||||| || | ||||| | | |||| ||| || || | | Sbjct 4629 GATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTG--CTGAATT- 4573 Query 37352 AGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGC 37411 ||||||||| ||| ||| | ||||| | |||||| ||| || || || || Sbjct 4572 ---AATCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGC 4516 Query 37412 TTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATA 37471 || ||||| || ||| | | | ||||| || || || || | ||| Sbjct 4515 GTTGAAGAGCCTTGCCTTATCTGCTTGGTTCTTGATATACGTGTCGATCAGGATGGAATA 4456 Query 37472 CATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGA 37531 ||| || ||||||||||||||||| || || || ||||||||||| || | | |||||| Sbjct 4455 CATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGC 4396 Query 37532 TAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGC 37591 | |||| ||||| | || | || | || ||| ||||| |||||| || Sbjct 4395 GATCTGAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGC 4336 Query 37592 TGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT--TTGATAAT-TTTTT 37648 ||| || || || ||||| | || || || || | || || | || | | | || Sbjct 4335 TGCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTGTCTTC 4276 Query 37649 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGC 37708 ||| || |||| ||||| || | || ||||| ||||| |||||||| ||| ||| Sbjct 4275 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGC 4216 Query 37709 ACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCT 37762 ||| || || |||||||||| || | |||||||| | ||| |||| Sbjct 4215 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCT 4162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592311669055720