Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq237 167 2e-36 >seq237 Length=72600 Score = 167 bits (184), Expect = 2e-36 Identities = 388/577 (67%), Gaps = 10/577 (2%) Strand=Plus/Plus Query 29814 GTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCC 29873 ||||| | ||| || || |||||||| ||||| ||||| | |||||| || | ||| Sbjct 66008 GTGATTCGTGTACACATGGGCGTCTCCAAGGGTATGGACGAGCTCTCCACAATCCAACCC 66067 Query 29874 GGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCC 29933 | | | || | || || || || | |||||||| ||||| || || || || Sbjct 66068 AGCGCATTTCGCGAGCAAAATAGTCAGCAGCGCATAGCTGGCAATGTTGAACGGGACGCC 66127 Query 29934 GAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTA 29993 ||| ||||| || | || ||||||||||||||| ||||| ||| || |||||| Sbjct 66128 GAGACCCATATCGGCACTCCGCTGGTAGAGCTGACAACTGAGCTTCCCGCCGGCCACGTA 66187 Query 29994 AAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30053 ||||| ||| | |||||| || || || ||||| | | | | ||||||||| Sbjct 66188 GAACTGCGACAGGACGTGGCATGGTGGCAGCGCCATCTCGGGGATGGCCACGGGGTTCCA 66247 Query 30054 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTG 30113 || |||| || || |||| ||| ||||||||| |||| ||| ||| || | Sbjct 66248 CGCACACAAGAGCATTCGCCGGTCGCTTGGGTTGTTTCTGAGTGCGTCGACGATTTTCCG 66307 Query 30114 CAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGA 30172 ||||| || || ||| | || | ||| || | | || || ||||| ||| |||| Sbjct 66308 GAGCTGGTCGACGCCCTTTCCAGTGTAATCATCGTCGCA-GTTGGTGTAGCTTGCGCCGA 66366 Query 30173 AATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG--AA 30230 | |||| ||| ||||| || ||||| ||||| ||||||||| || | | ||| | Sbjct 66367 AGTGCCGCCATTGGAAGCCATACACTGGTCCGAGGTCTCCC---TCACGTCGATCGGTGA 66423 Query 30231 GCCCCTCT-TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30289 |||| | ||| | | ||||| ||||| || ||||||| || || |||| | Sbjct 66424 GCCCAAGTGAGTCGAGGTATTCTCTTGAACCATTTCCGTCCCATATGCGAACGTCCTTAT 66483 Query 30290 CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTG-ACGAACCACAGCAGCTCCTCCACGACG 30348 | | | |||| || || | | | ||| | |||||| | ||||| || |||||| Sbjct 66484 CACGCAAATGGTTGGCGTCGGT-GTCTCCCTGAATGAACCAGAAAAGCTCTTCGACGACG 66542 Query 30349 GCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 | |||| ||||| | ||||||||| || ||||||| Sbjct 66543 CCTCTCCAGAAGACACGCTTGGTCGTCAGCAGGGGAA 66579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408614148841289