Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq254 210 4e-49 seq531 141 2e-28 seq171 141 2e-28 seq243 102 2e-16 >seq254 Length=68440 Score = 210 bits (232), Expect = 4e-49 Identities = 661/1002 (66%), Gaps = 33/1002 (3%) Strand=Plus/Plus Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||| ||||| | || ||||||||| |||| || || |||||||| || ||||| Sbjct 31329 GTGTATGGCTCAAAGCACTCGTTGTTTCCCAATATTTGACTCGTGCTGGCAGTCGGCATA 31388 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCC 213080 || ||||| |||||||| || | || || |||| |||| || | | || ||| Sbjct 31389 GGTGCCACAAGGAGACTATTTCGGACGCCATGCTTCATGATGCGGGACTTCAATTCCGCC 31448 Query 213081 CAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATG 213140 |||||||||| | | | || ||| | |||||| ||||||||| |||| | ||| Sbjct 31449 CAGTCCCATC-----GCCCGCTCTTCG-GCGTCACGTCCCACATGTCGTACTGGAGGATT 31502 Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 || |||||||| || || |||||||| | || ||||||| ||| | || | Sbjct 31503 CCCTTGCTCACTGGACTTCCCTGGTACGTTTCATACGGGCCATCCTCACTCGCGATGAGA 31562 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| ||| ||| || ||| ||||||||||||||||||| || ||||| |||| Sbjct 31563 CAGCTTTCCTCCAGCGCGGCGAAGTAGATGGTTTCAAATATGTCTTCGTTGATGCGCTTG 31622 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 |||| | | |||||| || || | || | ||||| || || ||||| ||| Sbjct 31623 GCCTTGGCGCTCGTGAATGGAATGCGGAGATTGAGGTAGACATCGGCAAGTCCCTGCACC 31682 Query 213321 CCGATGCCGATGGGTCTGTGTCTCAGGTT-AGACTTGGAGCACTCCTCCAAGGGGTAAAA 213379 || | ||||||||||| || | || ||| | | | || ||| |||| |||||||| Sbjct 31683 CCAAGGCCGATGGGTCGATGCCGCATGTTGCTTCGTCGGGC-CTCTTCCACTGGGTAAAA 31741 Query 213380 GTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACA-TGGGCCAGGT 213438 ||||| |||||||| |||||||| | || || | | || | | || | | Sbjct 31742 GTTGCGGTCGATGACGAGATTGAGGTTTCTCGTTGCGA--TGCGTACGATTCTGCGAAG- 31798 Query 213439 ACTCGTGATTGAACACGT-AG--CCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGG 213495 || | || | || || || | || | | |||| || || |||| | || Sbjct 31799 -CTTCTCATAGTCCATGTCAGTTTTGTCTTCGTTGAGGAACTTTGGGAGCGCGAGGGAGG 31857 Query 213496 CCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555 | |||||||| ||||| || || | | | |||||||| |||||||| |||||||| | Sbjct 31858 CGAGGTTGCACACGGCGACTTCATCCGGTGCGGTGTACTCGATGATCTCCGTGCACAGAT 31917 Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTG 213614 | |||| |||||| || ||||| || ||||| ||| ||||| | ||| | ||| ||| Sbjct 31918 TTGAGCATTTGATGGTTCCAAGGTTTTGCTGGTTCGAC-TTGCGGTTGCATGCATCTTTG 31976 Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTAC 213674 || |||| || || | || ||||| | ||| | | | || | |||||| | | Sbjct 31977 TATAGCAAATACGGCGTTCCCGTCTCGATCTGCGCTTCAATGATGGCGAACCAGAGAT-C 32035 Query 213675 CTGGCCTTGACCACCCGCCTG-ACAGCTCCGGGCGTAGC---CTCGTACTGTTCGTAGAG 213730 || | | ||| | | || || || || | ||||||||| || ||||| Sbjct 32036 TTGTGC--GTCCATCGTCTTGTAC----CCTTTATTATCCTTCTCGTACTGCTCATAGAG 32089 Query 213731 -CTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGA 213789 ||| | |||||| ||||||| | | || || || | | |||| | | Sbjct 32090 ACTC-TCGAATTCAGCGCCCCAGCAATCGGCGAGCCCAGGGGCTGTTTTGGGATCGAAAA 32148 Query 213790 GGCTCCAGTCCCCGTCATCTCTG-ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCG 213848 | |||| | | | || ||| |||| || |||||| ||||| |||| ||| || || Sbjct 32149 GTGTCCATTTGGCCT-TTCGCTGCACTCGCTTCATGAAGAGGTCGGGGATCCAGAGACCG 32207 Query 213849 GTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAG 213908 ||| ||||| || | || |||| ||| || | ||| || ||| | | ||| Sbjct 32208 TAGAAGAGGTCTCTCGCCCGAATCTCCTCCTTGCCGGTGTTCTTCTTCAGGTTCAAAAAA 32267 Query 213909 TCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAG 213950 || | || || |||||||||||||| | ||||||||||||| Sbjct 32268 TCCATAATATCAGCGTGCCACGGCTCAAGGTAGATGGCAAAG 32309 >seq531 Length=50098 Score = 141 bits (156), Expect = 2e-28 Identities = 380/575 (66%), Gaps = 12/575 (2%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || || ||||| | |||||| || || || ||| |||||| |||| |||| | | Sbjct 47734 CAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAAA 47675 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | || ||||||||||||||||| |||| ||| ||||||| Sbjct 47674 CCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAAG 47615 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || |||||||| || |||||| || || || || |||| || | | || | | Sbjct 47614 ATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTC--TGCTGAATTA- 47558 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||||| || ||||| | ||||||| || | || || || ||||| || || | Sbjct 47557 ATCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTG 47498 Query 48371 AAGAGCTTCTTGCACTCACCTGC---GTCCGCAACATAGGTAGTGAGCAGCTTTGCGTAC 48427 |||||| ||||| || | |||| || | | ||| || || ||| | | ||| Sbjct 47497 AAGAGC--CTTGC-CTTATCTGCTTGGTTCTTGATATACGTGTCGATCAGGATGGAATAC 47441 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 ||||| ||||| | ||| || || ||||| ||||| || || ||| | | ||| Sbjct 47440 ATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCG 47381 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 | ||| | || | ||| | || ||||||||| |||||| ||||| || || Sbjct 47380 ATCTGAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCT 47321 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTC 48604 || || || || || || || || | ||| || ||||||| || | | || | | | Sbjct 47320 GCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTGTCTTCC 47261 Query 48605 CAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCT 48664 || | | || |||| | ||||| |||||||| || ||||| || || || |||| Sbjct 47260 CATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCT 47201 Query 48665 TTTTTGTACATGCCCCATATGTCCGGATAGTCTAT 48699 | |||||| | ||| || || ||||| || || Sbjct 47200 TCTTTGTATTTCTTCCAAATATCGGGATACTCGAT 47166 >seq171 Length=86538 Score = 141 bits (156), Expect = 2e-28 Identities = 380/575 (66%), Gaps = 12/575 (2%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || || ||||| | |||||| || || || ||| |||||| |||| |||| | | Sbjct 4748 CAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAAA 4689 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | || ||||||||||||||||| |||| ||| ||||||| Sbjct 4688 CCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAAG 4629 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || |||||||| || |||||| || || || || |||| || | | || | | Sbjct 4628 ATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTC--TGCTGAATTA- 4572 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||||| || ||||| | ||||||| || | || || || ||||| || || | Sbjct 4571 ATCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTG 4512 Query 48371 AAGAGCTTCTTGCACTCACCTGC---GTCCGCAACATAGGTAGTGAGCAGCTTTGCGTAC 48427 |||||| ||||| || | |||| || | | ||| || || ||| | | ||| Sbjct 4511 AAGAGC--CTTGC-CTTATCTGCTTGGTTCTTGATATACGTGTCGATCAGGATGGAATAC 4455 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 ||||| ||||| | ||| || || ||||| ||||| || || ||| | | ||| Sbjct 4454 ATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCG 4395 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 | ||| | || | ||| | || ||||||||| |||||| ||||| || || Sbjct 4394 ATCTGAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCT 4335 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTC 48604 || || || || || || || || | ||| || ||||||| || | | || | | | Sbjct 4334 GCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTGTCTTCC 4275 Query 48605 CAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCT 48664 || | | || |||| | ||||| |||||||| || ||||| || || || |||| Sbjct 4274 CATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCT 4215 Query 48665 TTTTTGTACATGCCCCATATGTCCGGATAGTCTAT 48699 | |||||| | ||| || || ||||| || || Sbjct 4214 TCTTTGTATTTCTTCCAAATATCGGGATACTCGAT 4180 >seq243 Length=69200 Score = 102 bits (112), Expect = 2e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 213495 GCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGG 213554 || || ||||| ||||| ||||| | || | ||| || || | ||| || ||||||||| Sbjct 22406 GCGAGATTGCAGACGGCAACCTCGTCAGGGGATGTATATTCGACGATTTCAGTGCACAGG 22347 Query 213555 TTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTG 213614 ||||| || ||| ||||||| |||| || || |||||| | || | ||||| Sbjct 22346 TTGCTACACTTGATCGTGCCCAAATTCTTCTGATTGGACTTTTCATTACATGCGTCCTTA 22287 Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAG 213670 || |||||||| |||| ||||| |||| ||||||| | | || ||| |||||| Sbjct 22286 TAAAGCATGTACGGGGTACCGGTTTCTATCTGGGACTCGATGATTTGGAACCAGAG 22231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931524730597120