Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq117 98.7 6e-15 seq2 96.9 2e-14 seq166 86.0 4e-11 >seq117 Length=108883 Score = 98.7 bits (108), Expect = 6e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 || || ||| ||| ||||| || |||||||||||| |||| || ||| | || || || Sbjct 47437 GACTTCTCAAGTCCCAATATCGCGAAGGAAATGCATGTTGGCCATTTGCGGTCAACGATC 47496 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAAAT 817219 ||||| || | || || || || || || || ||||| ||||| | | || || Sbjct 47497 ATTGGAGATGCACTGTGCAGGATGTACGAGTTCTGTGGCCACGAAGTGCTTCGTATCAAC 47556 Query 817220 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCATA 817263 ||||| ||||||||||| ||||||||||| ||| | || || || Sbjct 47557 CATATCGGTGATTGGGGCACACAATTTGGCATGCTCATAGCCTA 47600 >seq2 Length=132159 Score = 96.9 bits (106), Expect = 2e-14 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || || || || || ||||| || |||||||| || || || || | || || Sbjct 77978 ACGCAGCCGCAGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGACAGCGT 77919 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || || |||||||| || ||||| || || || || || || || ||||| Sbjct 77918 GCGCCCATCCTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCC 77859 Query 480671 TTCCTTGTCTTGAATCTTTTG-TTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCA 480728 |||||||||||||| |||||| |||| |||||| ||||| || || | ||| Sbjct 77858 TTCCTTGTCTTGAA-CTTTTGCCTTGATGTTTTCAATGGTATC-GTTTGCTTCCACCTCA 77801 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || ||||| || | ||| || ||||| || || Sbjct 77800 AGGGTGATGGTCTTACCAGTCAAAGTTTTGACGAAGATCTG 77760 Score = 89.7 bits (98), Expect = 3e-12 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || || || || || || ||||| || |||||||| || || || || | || || Sbjct 78205 CGCAGCCGAAGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGACAGCGTG 78146 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||| || || |||||||| || ||||| || || || || || || || |||||| Sbjct 78145 CGCCCATCCTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCT 78086 Query 480672 TCCTTGTCTTGAATCTTTTG-TTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAA 480729 ||||||||||||| |||||| |||| |||||| ||||| || || | || | Sbjct 78085 TCCTTGTCTTGAA-CTTTTGCCTTGATGTTTTCAATGGTATC-GTTTGCTTCCACCTCGA 78028 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || || || ||||| || ||||| || || Sbjct 78027 GTGTGATAGTCTTGCCAGTCAGAGTTTTGACGAAGATCTG 77988 >seq166 Length=88622 Score = 86.0 bits (94), Expect = 4e-11 Identities = 144/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 474674 TCAATGGTTTTAGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAA-GAAGTAA 474731 ||||||||||| || ||||| ||| || |||| || || ||||| ||| ||||| | Sbjct 22182 TCAATGGTTTTGATTAAGATGAAGGAAATCGCCGAG-TCCTA-CTTGGGCAAGGAAGTGA 22239 Query 474732 CTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAG 474791 | || || | |||||||| || || || || || || || || || ||||| || | Sbjct 22240 AGAAGGCCGTTGTGACTGTTCCTGCGTACTTCAACGACTCGCAGCGCCAGGCAACAAAGG 22299 Query 474792 ATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCG 474851 | || ||| || ||||| || | ||||| || || || ||||| ||||| || |||| Sbjct 22300 ACGCCGGATCCATCGCAGGCCTCGAAGTTTTGCGCATCATCAATGAGCCAACCGCTGCCG 22359 Query 474852 CACTTGCTTATGGTCTTGATAAG 474874 | | || ||||| || || ||| Sbjct 22360 CCATCGCCTATGGACTCGACAAG 22382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268149473867564