Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq243 154 7e-33 >seq243 Length=69200 Score = 154 bits (170), Expect = 7e-33 Identities = 161/207 (78%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 25930 CTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTC 25989 || |||||| |||||||||||||| | | ||||||| | ||| | || | ||||||||| Sbjct 22086 CTTCATAAACAAATCTGGAATCCAGAGTCCATAAAAGAGATCACGAGCGCGCATTTCTTC 22027 Query 25990 TTTTCCG-TGATTCTTTTTTAGATC-TAAGAAAT-CAAAAATATCTGAGTGCCATGGTTC 26046 ||| ||| || ||| || || | | |||||| | |||||||||| ||||| ||||| Sbjct 22026 TTTCCCGGTGTTTCGCTT---GAGCGTGAGAAATTCGAAAATATCTGCATGCCAGGGTTC 21970 Query 26047 TAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGT 26106 || |||||| ||||| |||||||||||| || |||||||| || || |||| ||| || Sbjct 21969 TACATAGATTGCAAATGCACCTTTTCTTTTGCCACCACCTTGGTCAACATATCGTGCCGT 21910 Query 26107 TTCATTGAAAACTTTCAACATTGGAAC 26133 ||||||||||| | ||||||||| Sbjct 21909 ATCATTGAAAACACGAAGCATTGGAAC 21883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253037862839975