Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq254 203 4e-47 seq243 86.0 7e-12 >seq254 Length=68440 Score = 203 bits (224), Expect = 4e-47 Identities = 1123/1766 (64%), Gaps = 78/1766 (4%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 |||||||||||| ||||||| ||||| |||| || ||| | || | || Sbjct 32698 CCACAGTACATGCTCATGCGCGTCGCCCTCGGAATTCACTCCACAAACCTACCACGGGTT 32639 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 || ||||| || || | | || || || ||||||| || || || || || |||| | Sbjct 32638 TTCGAGACGTATGAGTATCTCTCGCAGGGAATGTTCACACATGCGACCCCCACGCTCTAC 32579 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 ||||| || || ||| | ||||||||| |||||||||||| | || ||| || || Sbjct 32578 AATGCCGGCACCCCACGCCCGCAGATGAGCAGTTGCTTCCTGCTGGCGCTCAAAGATGAT 32519 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || ||| | ||||| || | || || | | ||||||| ||||| ||| ||| Sbjct 32518 TCGATCGAAGGTATTTACGATACGCTCAAGACATGTGCGCTCATCTCGAAGAACAGTGGT 32459 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATA-AATCTCGTATTCGGGGGACAAA 75510 || ||||| |||| | || | | || | | || || ||||| |||||||| Sbjct 32458 GGCATTGGCTTGCATGTTCACAACATTCGAAGCTCTGGAAGCTAC-ATTCGCGGGACAAA 32400 Query 75511 TGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 ||| |||| |||| || | || ||||| || || || |||| ||| || ||||| Sbjct 32399 TGGGG--TCAGTAATGGAATAGTCCCCATGCTGCGAGTCTTCAACGACACTGCCCGCTAC 32342 Query 75569 GTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 || | |||| || | ||||| || | | || ||||| | || || ||||| Sbjct 32341 GTCGACCAAGGAGGTGGAAAGCGCAAAGGCAGCTTTGCCATCTACCTTGAGCCGTGGCAC 32282 Query 75626 GCCGATATCATGGAGTTCCTTGAG--TTACGACTCAACCAAGGTGACGAAGAGGCTCGGT 75683 || ||||| ||||| || |||| | | || ||| || | || ||| |||| Sbjct 32281 GCTGATATTATGGATTTT-TTGAACCTGAAGAAG-AACACCGGCAAGGAGGAGATTCGGG 32224 Query 75684 GTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGG 75743 ||||| ||||| | || ||||| || ||||| ||||||||||| || || | Sbjct 32223 CGAGAGACCTCTTCTACGGTCTCTGGATCCCCGACCTCTTCATGAAGCGAGTGCAGC-GA 32165 Query 75744 GTGGTCAA-TGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGG 75801 || ||| ||| | |||||| ||| | | || || || ||| |||| || | ||| Sbjct 32164 AAGGCCAAATGGACACTTTTCGATCCCAAAACAGCCCCTGGGCTCGCCGATTGCTG-GGG 32106 Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCGAC 75858 | || || || ||||| |||| || |||| || || ||| ||| Sbjct 32105 CGCTGAATTCGAGAGTCTCTATGAGCAGTACGAGAAGGATAATAAAGGGTACAAGACGA- 32047 Query 75859 TGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACC 75918 || || || ||| | ||| || || | || | |||| ||||| ||||| || Sbjct 32046 TGGAC--GCACAAGATCTCTGGTTCGCCATCATTGAAGCGCAGATCGAGACGGGAACGCC 31989 Query 75919 ATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAAT 75978 ||| |||| ||||| ||||| || ||| ||| ||||| | || | ||||| || Sbjct 31988 GTATTTGCTATACAAAGATGCATGCAACCGCAAGTCGAACCAGCAAAACCTTGGAACCAT 31929 Query 75979 CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038 ||| |||||||||| |||||||| || | |||||||| | |||||| || || Sbjct 31928 CAAATGCTCAAATCTGTGCACGGAGATCATCGAGTACACCGCACCGGATGAAGTCGCCGT 31869 Query 76039 TTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGA---CTCGCACTTT 76095 ||||| | || || |||| || ||||||| |||| ||||| | || || | Sbjct 31868 GTGCAACCTCGCCTCCCTCGCGCTCCCAAAGTTCCTCAACGAAGACAAAACTGACA---T 31812 Query 76096 TGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCAT 76155 || ||||| || |||| |||| | || | || | ||| || || | ||||| Sbjct 31811 GGACTATGAGAAGCTTCGCAGAATCGTACGCATCGCAACGAGAAACCTCAATCTCGTCAT 31752 Query 76156 TGACAGAAATTTTTATCCCGTTGAGACTGCGCGA--AAGTCTAATATGCGACACAGACCT 76213 ||| | || ||||| || || || || ||| ||| || ||||| || |||| Sbjct 31751 CGACCGCAACTTTTACCCAGTGGAAGAGGCCCGACGAAGC--AACATGCGGCATCGACCC 31694 Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTAT---TTATTTTGTGCCGCTACGCATTT 76270 || || | || || || || || || ||||| | | | | || |||||| Sbjct 31693 ATCGGCCTTGGGGTGCAGGGACTTGCCGATGTCTACCTCAAT--------CTCCGCATTC 31642 Query 76271 GATTCAGATG-----AAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACG 76325 ||||| | | |||||| || || | || ||||||||||| || || Sbjct 31641 CATTCACGAGCGCCAAGGCCAAGCGCATCAACGAAGACATATTTGAAACCATCTACTTCG 31582 Query 76326 CATCCCTGGAGGCGAGTTGTGAATTGGC---TGAAGCCCAAGGTTCCTATGAGACATTTG 76382 | | ||||||| || ||| | || ||| | | || | ||||| || | Sbjct 31581 CCGCGCTGGAGGAAAGCTGTCTCATCGCGAGTGAGG---ATGGCCCGTATGAAACGTACC 31525 Query 76383 AGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACC-AAG 76441 |||| ||| | | | | || | || |||| || |||||||| | ||| || ||| Sbjct 31524 AGGGAAGTCCAGTGAGCAAGGGAATCCTCCAGTACGACATGTGGGACG-TGACGCCGAAG 31466 Query 76442 CTCAAC---TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 76498 | | ||||||| | | ||| ||||||| | || | || | || || Sbjct 31465 AGCGGGCGATGGGACTGGGCGGAATTGAAGTCCCGCATCATGAAGCATGGCGTCCGAAAT 31406 Query 76499 AGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 76558 ||||| | ||||||| ||||| || ||| ||| ||||| ||||| || || || Sbjct 31405 AGTCTCCTTGTGGCACCTATGCCGACTGCCAGCACGAGTCAAATATTGGGAAACAACGAG 31346 Query 76559 TGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTC 76618 |||||||| |||||||| | ||||| || ||| | || |||| |||||||| Sbjct 31345 TGCTTTGAGCCATACACGAGCAACATGTATCTGCGCCGAGTCCTCAGTGGTGAGTTCCCA 31286 Query 76619 ATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATG 76678 | ||||| | ||| |||| || | | || || || ||| || || | | Sbjct 31285 GTCGTCAATCGGTGCCTTGTCAGGGATTTGATCCAGGAGGGCCTGTGG---AATGAGACG 31229 Query 76679 ------AAGGATCTCATGGTGAA-AGCGGGTGGTTCCATTCAAAATATCTCAGATATCCC 76731 || ||||| | || | ||| | | | ||| | || | | ||| Sbjct 31228 TCCCGAAATACACTCATCGCCAACAACGGCAG----CGTGCAACACATTGAGGGTCTCCG 31173 Query 76732 AGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGA 76791 ||||| ||||| | | ||||| || ||||||||||||||| || || | || || Sbjct 31172 CGATGAGCTCAAGGAGATATACCGAACTGTGTGGGAAATCAAGCAAAAGGACATTATCGA 31113 Query 76792 CATGGCCGCAGATCGTGGTCG--CTTCATTGATCAAAGTCAAAGTATGAATCTATTCATG 76849 ||||| || || || ||||| || ||||| ||||| || || ||||||| ||| | Sbjct 31112 TATGGCGGC-GA-CGCGGTCGGCCTATATTGACCAAAGCCATAGCTTGAATCTTTTCCTC 31055 Query 76850 GAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTC 76909 || ||||||| |||| ||| | || ||||| | |||| ||||||| || || Sbjct 31054 GAGTCGCCAACGAGCTCCACGCTGACATCGATGCACTTTTACGGCTGGAAACGTGGACTG 30995 Query 76910 AAAACCGGAATGTACTATCTCCGATC 76935 || || || || |||||||| || || Sbjct 30994 AAGACAGGGATCTACTATCTGCGGTC 30969 >seq243 Length=69200 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 76751 TACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGT 76810 ||| | || || ||||| |||||| ||||| | || | ||||||| | |||||| Sbjct 23122 TACAGAACCGTCTGGGAGATCAAGCAAAAAGACCTTATCAATATGGCCGTCGCGCGTGGT 23181 Query 76811 CGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAG 76870 | ||| || ||||| ||| ||||||| || | ||| ||||| | | || Sbjct 23182 GCATACATCGACCAAAGCCAATCCCTGAATCTCTTTTTAGAAGCCCCAACAACTGCGCAG 23241 Query 76871 CTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTC 76930 ||| | || ||||| | |||||||||| | || ||||||||||||||||| ||||| Sbjct 23242 CTCACGTCCATGCACTTCTACGCGTGGACCAAAGGACTCAAAACCGGAATGTATTATCTT 23301 Query 76931 CGATC 76935 ||||| Sbjct 23302 CGATC 23306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596564432215840