Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq531 147 3e-30 seq171 141 1e-28 >seq531 Length=50098 Score = 147 bits (162), Expect = 3e-30 Identities = 380/574 (66%), Gaps = 16/574 (3%) Strand=Plus/Minus Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208 ||||| | ||| || || ||| ||| || || ||||| | ||| || | |||||||| Sbjct 47743 TATAAGAGACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTG 47684 Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268 || ||||| || ||||||| |||| || || ||||| || || | |||||| | | Sbjct 47683 AAGGTTAAACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCA 47624 Query 18269 GAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTA 18328 ||||| || ||||| || |||||| | | | |||||| || || || | Sbjct 47623 CTGAAGAAGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCT--- 47567 Query 18329 TTGCTCAGT--ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCT 18386 ||| | | |||||||| |||||||| | | | |||||| ||| ||| Sbjct 47566 --GCTGAATTAATCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCT 47509 Query 18387 CTATAGCATTAAACAAATCATCTTTTTCT--TTGGAATCTTTTATATAAGTGTCGATTAA 18444 | ||||| || || | | || ||| |||| |||| ||||| |||||||| | Sbjct 47508 CCATAGCGTTGAAGAGCCTTGCCTTATCTGCTTGGT-TCTTG-ATATACGTGTCGATCAG 47451 Query 18445 CAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCT 18504 | |||||||| || || || || |||| || || || || |||| |||||| | | Sbjct 47450 GATGGAATACATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACG 47391 Query 18505 AGCCTCGG-GATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATAC 18563 | | || | ||| | |||| ||| | || | | | | | ||||||| ||||| | Sbjct 47390 AACTTCAGCGATCT-GAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTC 47332 Query 18564 CGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA 18623 | |||| | |||||||||||||| ||| | || ||||| || || | || || | Sbjct 47331 CATCAGATGCTGCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAA 47272 Query 18624 GATTG---TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAG 18680 | ||| | |||||| | | ||||| || || || |||||||| ||||||||| | Sbjct 47271 GCTTGTCTTCCCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACG 47212 Query 18681 ATGATTCGGCCTGTTTGTACATTTTATAAATATC 18714 | | || || | |||||| | || ||||||| Sbjct 47211 AAGCCTCTGCTTCTTTGTATTTCTTCCAAATATC 47178 >seq171 Length=86538 Score = 141 bits (156), Expect = 1e-28 Identities = 379/574 (66%), Gaps = 16/574 (3%) Strand=Plus/Minus Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208 ||||| | ||| || || ||| ||| || || ||||| | ||| || | |||||||| Sbjct 4757 TATAAGAGACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTG 4698 Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268 || ||||| || ||||||| |||| || || ||||| || || | |||||| | | Sbjct 4697 AAGGTTAAACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCA 4638 Query 18269 GAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTA 18328 ||||| || ||||| || |||||| | | | |||||| || || || | Sbjct 4637 CTGAAGAAGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCT--- 4581 Query 18329 TTGCTCAGT--ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCT 18386 ||| | | |||||||| |||||| | | | | |||||| ||| ||| Sbjct 4580 --GCTGAATTAATCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCT 4523 Query 18387 CTATAGCATTAAACAAATCATCTTTTTCT--TTGGAATCTTTTATATAAGTGTCGATTAA 18444 | ||||| || || | | || ||| |||| |||| ||||| |||||||| | Sbjct 4522 CCATAGCGTTGAAGAGCCTTGCCTTATCTGCTTGGT-TCTTG-ATATACGTGTCGATCAG 4465 Query 18445 CAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCT 18504 | |||||||| || || || || |||| || || || || |||| |||||| | | Sbjct 4464 GATGGAATACATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACG 4405 Query 18505 AGCCTCGG-GATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATAC 18563 | | || | ||| | |||| ||| | || | | | | | ||||||| ||||| | Sbjct 4404 AACTTCAGCGATCT-GAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTC 4346 Query 18564 CGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA 18623 | |||| | |||||||||||||| ||| | || ||||| || || | || || | Sbjct 4345 CATCAGATGCTGCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAA 4286 Query 18624 GATTG---TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAG 18680 | ||| | |||||| | | ||||| || || || |||||||| ||||||||| | Sbjct 4285 GCTTGTCTTCCCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACG 4226 Query 18681 ATGATTCGGCCTGTTTGTACATTTTATAAATATC 18714 | | || || | |||||| | || ||||||| Sbjct 4225 AAGCCTCTGCTTCTTTGTATTTCTTCCAAATATC 4192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731865660158800