Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq531 132 6e-25 seq171 132 6e-25 seq254 109 7e-18 >seq531 Length=50098 Score = 132 bits (146), Expect = 6e-25 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 || || || |||||| ||| || ||||| ||||| |||| ||| || |||| ||||| Sbjct 48022 TAGTCACCGACGCGCTTCTCAAAGAAGTTTGTCTTTCCCTGGAGAGAAATCATTTCCATA 47963 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 | |||||||| ||||| |||| || | ||||| | | || ||| || Sbjct 47962 AAGTCAAACGGGTTTTTGACTTTGTACCGCTTCTCATACCCGAGTGCGGTGATCAGACGA 47903 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 |||||| ||||| ||||||||| ||| || | |||||||| |||||||| ||| Sbjct 47902 TCGGCGCAGAACTCAATGTACTGGTTCATAAGATCTGCGTTCATCCCGATGAGTCGCACG 47843 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932 || |||| ||| |||||||||||| |||||| | |||||||||| |||||| Sbjct 47842 GGAAGCGCATCGGTCACAAACTCTTGCTCGATTTTGACGGCCTCGTGGATGAT 47790 Score = 98.7 bits (108), Expect = 1e-14 Identities = 182/265 (69%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 ||||| || |||| | || ||||| | || |||||||||||||| || || || ||| Sbjct 47692 TCGTTACTGAAGGTTAAACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAG 47633 Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320 ||||| || ||| ||||| ||||| || || || || |||| || | ||||| || Sbjct 47632 AAACTTCCACTGAAGAAGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAA- 47574 Query 869321 GTGTCGAGGCCCTCCT-TGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGA 869379 |||| || || || ||||| || || ||||| | ||||| | | || | Sbjct 47573 ----CGAG--TCTGCTGAATTAATCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACA 47520 Query 869380 CGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGT 869439 ||| | || || || ||| ||||| |||| || || ||| ||||| ||| || Sbjct 47519 CGGAATAGTCTCCATAGCGTTGAAGAGCCTTGCCTTATCTGCTTGGTTCTTGATATACGT 47460 Query 869440 GTCGATCAGGAGCGAATAGGTCTCC 869464 ||||||||||| ||||| ||||| Sbjct 47459 GTCGATCAGGATGGAATACATCTCC 47435 Score = 95.1 bits (104), Expect = 1e-13 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| || || || || ||||| ||||| || |||||| | || || || | | Sbjct 47436 CCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGATCT 47377 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | | || |||||||| || | || || ||||| || || || || || |||| Sbjct 47376 GAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTGCGA 47317 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC 869797 |||| ||||| ||||||||||| ||||| |||||||||||| | ||| Sbjct 47316 AAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGC 47270 >seq171 Length=86538 Score = 132 bits (146), Expect = 6e-25 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 || || || |||||| ||| || ||||| ||||| |||| ||| || |||| ||||| Sbjct 5036 TAGTCACCGACGCGCTTCTCAAAGAAGTTTGTCTTTCCCTGGAGAGAAATCATTTCCATA 4977 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 | |||||||| ||||| |||| || | ||||| | | || ||| || Sbjct 4976 AAGTCAAACGGGTTTTTGACTTTGTACCGCTTCTCATACCCGAGTGCGGTGATCAGACGA 4917 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 |||||| ||||| ||||||||| ||| || | |||||||| |||||||| ||| Sbjct 4916 TCGGCGCAGAACTCAATGTACTGGTTCATAAGATCTGCGTTCATCCCGATGAGTCGCACG 4857 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932 || |||| ||| |||||||||||| |||||| | |||||||||| |||||| Sbjct 4856 GGAAGCGCATCGGTCACAAACTCTTGCTCGATTTTGACGGCCTCGTGGATGAT 4804 Score = 98.7 bits (108), Expect = 1e-14 Identities = 182/265 (69%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 ||||| || |||| | || ||||| | || |||||||||||||| || || || ||| Sbjct 4706 TCGTTACTGAAGGTTAAACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAG 4647 Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320 ||||| || ||| ||||| ||||| || || || || |||| || | ||||| || Sbjct 4646 AAACTTCCACTGAAGAAGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAA- 4588 Query 869321 GTGTCGAGGCCCTCCT-TGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGA 869379 |||| || || || ||||| || || ||||| | ||||| | | || | Sbjct 4587 ----CGAG--TCTGCTGAATTAATCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACA 4534 Query 869380 CGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGT 869439 ||| | || || || ||| ||||| |||| || || ||| ||||| ||| || Sbjct 4533 CGGAATAGTCTCCATAGCGTTGAAGAGCCTTGCCTTATCTGCTTGGTTCTTGATATACGT 4474 Query 869440 GTCGATCAGGAGCGAATAGGTCTCC 869464 ||||||||||| ||||| ||||| Sbjct 4473 GTCGATCAGGATGGAATACATCTCC 4449 Score = 95.1 bits (104), Expect = 1e-13 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| || || || || ||||| ||||| || |||||| | || || || | | Sbjct 4450 CCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGATCT 4391 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | | || |||||||| || | || || ||||| || || || || || |||| Sbjct 4390 GAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTGCGA 4331 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC 869797 |||| ||||| ||||||||||| ||||| |||||||||||| | ||| Sbjct 4330 AAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGC 4284 >seq254 Length=68440 Score = 109 bits (120), Expect = 7e-18 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||| |||||||| |||| || |||| |||||||| | |||||| |||||||||| Sbjct 32180 CATGAAGAGGTCGGGGATCCAGAGACCGTAGAAGAGGTCTCTCGCCCGAATCTCCTCCTT 32239 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 |||| |||||| || |||| | | || | ||| || |||||||||||||| ||||| Sbjct 32240 GCCGGTGTTCTTCTTCAGGTTCAAAAAATCCATAATATCAGCGTGCCACGGCTCAAGGTA 32299 Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 | ||||||| ||| |||||||| || || || Sbjct 32300 GATGGCAAAGCTGCCTTTGCGCTTTCCACCTCC 32332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107082329174681