Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 seq243 98.7 9e-16 >seq2 Length=132159 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || || ||||| || ||||| || ||||| | | Sbjct 77985 ATGCAGATCTTCGTCAAAACTCTGACTGGCAAGACTATCACACTCGAGGTGGAAGCAAAC 78044 Query 24764 GACA-CAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || | || | |||| || |||||| | |||||||| |||||||| || || || || Sbjct 78045 GATACCATTGAAAACATCAAGGCAAAAG-TTCAAGACAAGGAAGGAATCCCACCAGACCA 78103 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | || || ||||| || ||||| |||||| | | | ||||||| || || Sbjct 78104 GCAGCGACTCATTTTCGCCGGAAAGCAGCTCGAGGATGGGCGCACGCTGTCAGACTACAA 78163 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| || ||| || || ||| | || | || |||| ||||| Sbjct 78164 CATTCAGAAAGAAAGCACCCTTCACCTCGTTCTTCGGCTGCGAGGAGG 78211 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| | || ||||| || || || || || || ||||| | | Sbjct 77757 ATGCAGATCTTCGTCAAAACTTTGACTGGTAAGACCATCACCCTTGAGGTGGAAGCAAAC 77816 Query 24764 GACA-CAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || | || | |||| || |||||| | |||||||| |||||||| || || || || Sbjct 77817 GATACCATTGAAAACATCAAGGCAAAAG-TTCAAGACAAGGAAGGAATCCCACCAGACCA 77875 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | || || ||||| || ||||| |||||| | | | ||||||| || || Sbjct 77876 GCAGCGACTCATTTTCGCCGGAAAGCAGCTCGAGGATGGGCGCACGCTGTCAGACTACAA 77935 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||| || ||| || || ||| | || |||| |||| || ||| Sbjct 77936 CATTCAGAAAGAAAGCACCCTTCACCTCGTTCTGCGGCTGCGTGGTGGC 77984 >seq243 Length=69200 Score = 98.7 bits (108), Expect = 9e-16 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 139079 AAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGG 139138 ||||||| || | ||||| || || || ||||| ||| | |||||||| ||||| | Sbjct 22414 AAATCGACGCGAGATTGCAGACGGCAACCTCGTCAGGGGATGTATATTCGACGATTTCAG 22355 Query 139139 CACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAG 139198 |||| || |||||||||||||| || ||||| | |||||| ||| ||||| | Sbjct 22354 TGCACAGGTTGCTACACTTGATCGTGCCCAAATTCTTCTGATTGGACTTTTCATTACATG 22295 Query 139199 CATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAAT 139250 | || || |||||||| ||||| || || ||||| | || | ||| || || Sbjct 22294 CGTCCTTATAAAGCATGTACGGGGTACCGGTTTCTATCTGGGACTCGATGAT 22243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449893702762040