Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq531 143 4e-28 seq171 143 4e-28 seq254 109 9e-18 seq98 98.7 2e-14 seq439 96.9 5e-14 seq95 96.9 5e-14 seq87 91.5 2e-12 seq122 89.7 8e-12 >seq531 Length=50098 Score = 143 bits (158), Expect = 4e-28 Identities = 183/250 (73%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||| ||| || || |||||| ||| || ||||| ||||| |||| ||| Sbjct 48037 ACGCCGGCCTTCTGATAGTCACCGACGCGCTTCTCAAAGAAGTTTGTCTTTCCCTGGAGA 47978 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTG--GCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 || |||| ||||| | |||||||| | | | ||| ||||||| |||||| Sbjct 47977 GAAATCATTTCCATAAAGTCAAACGGGTTTTTGACTTT--GTACCGCTTCTCATACCCGA 47920 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | | ||| || |||||| ||| |||||||||||| ||| || | ||||||| Sbjct 47919 GTGCGGTGATCAGACGATCGGCGCAGAACTCAATGTACTGGTTCATAAGATCTGCGTTCA 47860 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 | |||||||| |||||| |||| ||| | |||||||||| |||||| | |||||||| Sbjct 47859 TCCCGATGAGTCGCACGGGAAGCGCATCGGTCACAAACTCTTGCTCGATTTTGACGGCCT 47800 Query 794131 CGATGATGAT 794140 || |||||| Sbjct 47799 CGTGGATGAT 47790 Score = 123 bits (136), Expect = 4e-22 Identities = 210/305 (69%), Gaps = 6/305 (2%) Strand=Plus/Minus Query 794362 TCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAG 794421 ||||| || ||| | || ||||| | || |||||||||||||| || || |||||| Sbjct 47692 TCGTTACTGAAGGTTAAACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAG 47633 Query 794422 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAA 794481 ||||| || ||| ||||| ||||| || || || || ||||| || | ||||| || Sbjct 47632 AAACTTCCACTGAAGAAGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAAC 47573 Query 794482 GTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAG 794541 | || | || || ||||| || || ||||| | ||||| | | || | Sbjct 47572 GAGT------CTGCTGAATTAATCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACAC 47519 Query 794542 GGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTG 794601 || | || || || ||| ||||| |||| || | ||| ||||| || ||| Sbjct 47518 GGAATAGTCTCCATAGCGTTGAAGAGCCTTGCCTTATCTGCTTGGTTCTTGATATACGTG 47459 Query 794602 TCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAA 794661 ||||| |||| || || |||| ||||| || ||||| || ||||| ||||| |||||| Sbjct 47458 TCGATCAGGATGGAATACATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAA 47399 Query 794662 AAGCA 794666 ||||| Sbjct 47398 AAGCA 47394 >seq171 Length=86538 Score = 143 bits (158), Expect = 4e-28 Identities = 183/250 (73%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||| ||| || || |||||| ||| || ||||| ||||| |||| ||| Sbjct 5051 ACGCCGGCCTTCTGATAGTCACCGACGCGCTTCTCAAAGAAGTTTGTCTTTCCCTGGAGA 4992 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTG--GCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 || |||| ||||| | |||||||| | | | ||| ||||||| |||||| Sbjct 4991 GAAATCATTTCCATAAAGTCAAACGGGTTTTTGACTTT--GTACCGCTTCTCATACCCGA 4934 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | | ||| || |||||| ||| |||||||||||| ||| || | ||||||| Sbjct 4933 GTGCGGTGATCAGACGATCGGCGCAGAACTCAATGTACTGGTTCATAAGATCTGCGTTCA 4874 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 | |||||||| |||||| |||| ||| | |||||||||| |||||| | |||||||| Sbjct 4873 TCCCGATGAGTCGCACGGGAAGCGCATCGGTCACAAACTCTTGCTCGATTTTGACGGCCT 4814 Query 794131 CGATGATGAT 794140 || |||||| Sbjct 4813 CGTGGATGAT 4804 Score = 127 bits (140), Expect = 3e-23 Identities = 211/305 (69%), Gaps = 6/305 (2%) Strand=Plus/Minus Query 794362 TCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAG 794421 ||||| || ||| | || ||||| | || |||||||||||||| || || |||||| Sbjct 4706 TCGTTACTGAAGGTTAAACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAG 4647 Query 794422 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAA 794481 ||||| || ||| ||||| ||||| || || || || ||||| || | ||||| || Sbjct 4646 AAACTTCCACTGAAGAAGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAAC 4587 Query 794482 GTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAG 794541 | || | || || ||||| || || ||||||| ||||| | | || | Sbjct 4586 GAGT------CTGCTGAATTAATCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACAC 4533 Query 794542 GGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTG 794601 || | || || || ||| ||||| |||| || | ||| ||||| || ||| Sbjct 4532 GGAATAGTCTCCATAGCGTTGAAGAGCCTTGCCTTATCTGCTTGGTTCTTGATATACGTG 4473 Query 794602 TCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAA 794661 ||||| |||| || || |||| ||||| || ||||| || ||||| ||||| |||||| Sbjct 4472 TCGATCAGGATGGAATACATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAA 4413 Query 794662 AAGCA 794666 ||||| Sbjct 4412 AAGCA 4408 >seq254 Length=68440 Score = 109 bits (120), Expect = 9e-18 Identities = 189/268 (71%), Gaps = 10/268 (4%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| ||||| || |||||||| ||||| || |||||||| || | || || || Sbjct 32334 TGGTCGACGTAGCGGGCAGTGTCGTTGAAGACTCGCAGCATGGGGACTATTCCATT--AC 32391 Query 2073601 T--CGCCGTTGGTGCCCGCCAC-GTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAG 2073657 | | || || || ||||| | |||| || ||| || | ||||| | ||| Sbjct 32392 TGACCCCATTTGT-CCCGCGAATGTAGCTTCCAGAGCTTCGAATGTTGTGAACATGCAAG 32450 Query 2073658 CCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCC 2073717 || ||||| || ||| ||||||||||| || | || ||||| ||||| || || Sbjct 32451 CCAATGCCACCACTGTTCTTCGAGATGAGCGCACATGTCTTGAGCGTATCGTAAATACCT 32510 Query 2073718 TCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGT--TTTGCGGGCGCGCCG 2073775 |||||||| || | || | ||| ||| ||||| || | | |||||||| | | Sbjct 32511 TCGATCGAATCATCTTTGAGCGCCAGCAGGAAGCA--ACTGCTCATCTGCGGGCGTGGGG 32568 Query 2073776 TGCCGGCATTGAAGAGCGTGGGCGTCGC 2073803 ||||||||||| |||||||||| ||||| Sbjct 32569 TGCCGGCATTGTAGAGCGTGGGGGTCGC 32596 Score = 105 bits (116), Expect = 1e-16 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 2071860 CATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTT 2071919 ||| || |||||| |||| || ||||| ||||| || | |||||| |||||||||| Sbjct 32180 CATGAAGAGGTCGGGGATCCAGAGACCGTAGAAGAGGTCTCTCGCCCGAATCTCCTCCTT 32239 Query 2071920 GCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTA 2071979 |||| |||||| ||||||| | | || | | || |||||||||||||| ||||| Sbjct 32240 GCCGGTGTTCTTCTTCAGGTTCAAAAAATCCATAATATCAGCGTGCCACGGCTCAAGGTA 32299 Query 2071980 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 | ||||||| ||| |||||||| || || || Sbjct 32300 GATGGCAAAGCTGCCTTTGCGCTTTCCACCTCC 32332 >seq98 Length=35746 Score = 98.7 bits (108), Expect = 2e-14 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 1485477 GGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAG 1485536 || |||||| || || ||||| | | ||||||| | || || |||||| | | ||| Sbjct 32903 GGCGACGGCTTTCGTTCCCTCGGCCATGGCGTGCTTCGCGAGCTCGCCGGGGAGCGACAG 32844 Query 1485537 GCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAG 1485596 || ||||| |||||||||||||||| ||||| | | |||||| ||||| ||| Sbjct 32843 ACGGACGGCAGTCTGGATCTCGCGGGACGACATCGTCTGGGCCTTGTTGTGGCGCGTCAG 32784 Query 1485597 GCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGA 1485656 | | ||||||| | ||| || |||| ||||||||||| || || ||||| | Sbjct 32783 GGAGGCGGCCTCAACGGCGAGTCGCTCGAAGATGTCGTTGACGAAGGATGACATGACTGC 32724 Query 1485657 CATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||| |||| || || || | ||| ||| | |||||| ||| |||||| Sbjct 32723 CATGCCTTTGGTGCTGAACCCGATGTCCTTGTGGATCTGCTTCAGCGTCTTGTA 32670 >seq439 Length=146363 Score = 96.9 bits (106), Expect = 5e-14 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 1485477 GGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA-TGATCA 1485535 || |||||| || || ||||| | | ||||||| | || || || ||| | | ||| || Sbjct 92173 GGCGACGGCTTTCGTTCCCTCGGCCATGGCGTGCTTCGCGAGCTCACCGGGGAGTGA-CA 92231 Query 1485536 GGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCA 1485595 |||| ||||| |||||||||||||| | ||||| | | |||||| ||||| || Sbjct 92232 GGCGGACGGCAGTCTGGATCTCGCGCGACGACATCGTCTGGGCCTTGTTGTGGCGCGTCA 92291 Query 1485596 GGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCG 1485655 || | ||||||| | ||| || |||| ||||||||||| || || ||||| | Sbjct 92292 GGGAGGCGGCCTCAACGGCGAGTCGCTCGAAGATGTCGTTGACGAAGGATGACATGACTG 92351 Query 1485656 ACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||| |||| || || || | ||| ||| | |||||| ||| |||||| Sbjct 92352 CCATGCCTTTGGTGCTGAACCCGATGTCCTTGTGGATCTGCTTCAGCGTCTTGTA 92406 >seq95 Length=35521 Score = 96.9 bits (106), Expect = 5e-14 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 1485477 GGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA-TGATCA 1485535 || |||||| || || ||||| | | ||||||| | || || || ||| | | ||| || Sbjct 27631 GGCGACGGCTTTCGTTCCCTCGGCCATGGCGTGCTTCGCGAGCTCACCGGGGAGTGA-CA 27573 Query 1485536 GGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCA 1485595 |||| ||||| |||||||||||||||| ||||| | | |||||| ||||| || Sbjct 27572 GGCGGACGGCAGTCTGGATCTCGCGGGACGACATCGTCTGGGCCTTGTTGTGGCGCGTCA 27513 Query 1485596 GGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCG 1485655 || | | ||||| | ||| || |||| ||||||||||| || || ||||| | Sbjct 27512 GGGAGGCAGCCTCAACGGCGAGTCGCTCGAAGATGTCGTTGACGAAGGATGACATGACTG 27453 Query 1485656 ACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||| |||| || || || | ||| ||| | |||||| ||| |||||| Sbjct 27452 CCATGCCTTTGGTGCTGAACCCGATGTCCTTGTGGATCTGCTTCAGCGTCTTGTA 27398 >seq87 Length=36083 Score = 91.5 bits (100), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 1485481 ACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGC 1485540 ||||| || || ||||| | | ||||||| | || || || ||| | | ||| || Sbjct 22928 ACGGCTTTCGTTCCCTCGGCCATGGCGTGCTTCGCGAGCTCACCGGGGAGCGACAGACGG 22869 Query 1485541 ACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGG 1485600 ||||| |||||||||||||||| ||||| | | |||||| ||||| |||| | Sbjct 22868 ACGGCAGTCTGGATCTCGCGGGACGACATCGTCTGGGCCTTGTTGTGGCGCGTCAGGGAG 22809 Query 1485601 CCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATC 1485660 ||||||| | ||| || |||| ||||||||||| || || ||||| | ||| Sbjct 22808 GCGGCCTCAACGGCGAGTCGCTCGAAGATGTCGTTGACGAAGGATGACATGACTGCCATG 22749 Query 1485661 GATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 |||| || || || | ||| ||| | |||||| ||| |||||| Sbjct 22748 CCTTTGGTGCTGAACCCGATGTCCTTGTGGATCTGCTTCAGCGTCTTGTA 22699 >seq122 Length=470851 Score = 89.7 bits (98), Expect = 8e-12 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 1485477 GGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAG 1485536 || |||||| || || ||||| | | ||||||| | || || || ||| | | ||| Sbjct 152237 GGCGACGGCTTTAGTTCCCTCGGCCATGGCGTGCTTCGCGAGCTCACCGGGGAGCGACAG 152178 Query 1485537 GCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAG 1485596 || ||||| |||||||||||||||| ||||| | | |||||| ||||| ||| Sbjct 152177 ACGGACGGCAGTCTGGATCTCGCGGGACGACATCGTCTGGGCCTTGTTGTGGCGCGTCAG 152118 Query 1485597 GCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGA 1485656 | | ||||||| | ||| || |||| ||||||||||| || || ||||| | Sbjct 152117 GGAGGCGGCCTCAACGGCGAGTCGCTCGAAGATGTCGTTGACGAAGGATGACATGACTGC 152058 Query 1485657 CATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||| |||| || || || | ||| ||| | ||| || ||| |||||| Sbjct 152057 CATGCCTTTGGTGCTGAACCCGATGTCCTTGTGGATCTGTTTCAGCGTCTTGTA 152004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916172682429227