Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq254 163 3e-35 seq2 147 2e-30 seq243 91.5 1e-13 >seq254 Length=68440 Score = 163 bits (180), Expect = 3e-35 Identities = 929/1458 (64%), Gaps = 64/1458 (4%) Strand=Plus/Plus Query 148255 ACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAA 148314 || |||| || || | ||||| || ||| || || |||||||||| ||||||||| Sbjct 31273 ACCGATTGACGACTGGGAACTCACCACTGAGGACTCGGCGCAGATACATGTTGCTCGTGT 31332 Query 148315 ACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACG 148374 | || ||||| |||||||||| ||||| || || || | || || ||||| | Sbjct 31333 ATGGCTCAAAGCACTCGTTGTTTCCCAATATTTGACTCGTGCTGGCAGTCGGCATAGGTG 31392 Query 148375 CTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCG---CTTCAGAGCCGCCC 148431 | || || || || || | ||| || || || |||| ||||| |||||| Sbjct 31393 CCACAAGGAGACTATTTCGGA---CGCCATGCTTCATGATGCGGGACTTCAATTCCGCCC 31449 Query 148432 AGTCCCAGAGCGG---CGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGC 148488 ||||||| || | ||| ||||||| ||||||||||||||| || || || || Sbjct 31450 AGTCCCATCGCCCGCTCTTCGGCGTCACGTCCCACATGTCGTACTGGAGGATTCCCTTGC 31509 Query 148489 TAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCG 148548 | | || || |||| ||||| ||||| || | | | ||| | ||||| Sbjct 31510 TCACTGGACTTCCCTGGTACGTTTCATACGGGCCATCCTCACTCGCGATGAGACAGCTTT 31569 Query 148549 CCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT--GTTGAGCAGCGCCGCCGA 148606 |||| |||||| || |||| || || || ||| || || ||||| || ||| Sbjct 31570 CCTCCAGCGCGGCGAAGTAGATGGTTTC--AAATATGTCTTCGTTGATGCGCTTGGCCTT 31627 Query 148607 CTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCAC 148666 |||| | | || || || || | | | |||||||| ||||| || || | Sbjct 31628 GGCGCTCGTGAATGGAATGCGGAGATTGAGGTAGACATCGGCAAGTCCCTGCACCCCAAG 31687 Query 148667 GCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC-TCGAGCGGATAGTGGTTGC 148725 ||| ||||| || || |||||| | || || ||| || | || || ||||| Sbjct 31688 GCCGATGGGTCGATGCCGCATGTTGCTTCGTCGGGC-CTCTTCCACTGGGTAAAAGTTGC 31746 Query 148726 GGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTA--ATTCTGCGCAGCAATTC 148783 ||||||||| | || || | | | | | ||| |||||||| ||| ||| Sbjct 31747 GGTCGATGACGAGATTGAGGTTTCTCGTTGCGA--TGCGTACGATTCTGCGAAGC--TTC 31802 Query 148784 AAAATCGTACTTGTCA------TCTACGATG-----CATCGGTTCACGGCGATAGAGGCT 148832 || || | ||||| ||| || || | | || | |||| ||||| Sbjct 31803 -TCATAGTCCATGTCAGTTTTGTCTTCGTTGAGGAACTTTGG--GAGCGCGAGGGAGGCG 31859 Query 148833 AGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTG 148892 || ||||||||||| |||||||| ||| ||||||| | |||||| | ||||||||| Sbjct 31860 AGGTTGCACACGGCGACTTCATCCGGTGCGGTGTACTCGATGATCTCCGTGCACAGATTT 31919 Query 148893 CTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTAC 148952 ||||||||| || | ||| | || || ||||| |||||| || || ||||| Sbjct 31920 GAGCATTTGATGGTTCCAAGGTTTTGCTGGTTCGACTTGCGGTTGCATGCATCTTTGTAT 31979 Query 148953 AGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGC--AGGTCCT 149010 |||| ||||| || || || | ||||| ||| | ||| ||| | || || | Sbjct 31980 AGCAAATACGGCGTTCCCGTCTCGATCTGCGCTTCAATGATG--GCGAACCAGAGATCTT 32037 Query 149011 GCGCGCGCACTTGCTGCTCGTAGC---GACCCTCCTGCTCGTATAAAGTATACAGCCGCT 149067 | ||| || | || ||| | | |||| |||||| ||| || | || Sbjct 32038 GTGCGTCCA---TCGTCTTGTACCCTTTATTATCCTTCTCGTACTGCTCATAGAGACTCT 32094 Query 149068 CGAACGCCTCGCCGTAGCAATCGTCGAGACC-GGGGCACTTGTGCGGGCACATGAGCGAC 149126 |||| | |||| |||||||| |||| || ||||| || || || | || | | Sbjct 32095 CGAATTCAGCGCCCCAGCAATCGGCGAGCCCAGGGGCTGTTTTG-GGATCGAAAAGTGTC 32153 Query 149127 CA-CACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACAT 149185 || ||| | ||| | ||| |||||||| || || ||||| | |||||| |||| | Sbjct 32154 CATTTGGCCTTTCGC-TGCACTCGCTTCATGAAGAGGTCGGGGATCCAGAGACCGTAGAA 32212 Query 149186 GAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAA 149245 |||||| | |||| || || ||| |||| |||||| | | | Sbjct 32213 GAGGTCTCTCGCCCGAATCTCCTCCTTGCCGGTGTTCTTCTTCAGGTTCAAAAAATCCAT 32272 Query 149246 TATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT---GCCGCC 149302 || || |||||||||||||||| ||| | || | ||| |||||||| || || Sbjct 32273 AATATCAGCGTGCCACGGCTCAAGGTAGATGGCAAAGCTGCCTTTGCGCTTTCCACCTCC 32332 Query 149303 CTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCC---ACT 149359 |||||||||| ||| | ||| ||| || ||||| | ||| || | || || ||| Sbjct 32333 TTGGTCGACGTAGCGGGCAGTGTCGTTGAAGACTCGCAGCATGGGGACTATTCCATTACT 32392 Query 149360 GGCAGTGCCGTTAGTAGAGCTAATGCGACTGCC-GCGCGCTCGCACTTTGTGCACGTTGA 149418 | | || || || || |||| || || | || ||| | ||||| || | | Sbjct 32393 GAC---CCCATTTGTCCCGCGAATGTAGCTTCCAGAGC-TTCGAATGTTGTGAACATGCA 32448 Query 149419 CGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCA-GTCGCCGAGCGTCGAGTAGATG 149477 ||| ||||| || | || ||| |||||| ||| || ||| |||||| ||| || Sbjct 32449 AGCCAATGCCACCACTGTTCTTCGAGATGAGCGCACATGTC-TTGAGCGTATCGTAAATA 32507 Query 149478 CCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGC 149537 || ||||| || || | | |||||| ||||| || ||| ||||| | Sbjct 32508 CCTTCGATCGAATCATCTTTGAGCGCCAGCAGGAAGCAACTGCTCATCTGCGGGCGTGGG 32567 Query 149538 GTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCAT-CTC 149596 |||||||| | | | |||||| | || ||||| || ||| | || || ||| Sbjct 32568 GTGCCGGCATTGTAGAGCGTGGGGGTCGCATGTGT-GAACATTCCCTGCGAGAGATACTC 32626 Query 149597 GTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAG 149656 |||| ||||| || || | || | || || || | |||||||||||| || Sbjct 32627 ATACGTCTCGAAAACCCGTGGTAGGTTTGTGGAGTGAATTCCGAGGGCGACGCGCATGAG 32686 Query 149657 CATATGCTGCGGTCGCTC 149674 ||| | ||| |||||||| Sbjct 32687 CATGTACTGTGGTCGCTC 32704 >seq2 Length=132159 Score = 147 bits (162), Expect = 2e-30 Identities = 150/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 133470 TCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 |||||||| || ||||| || || |||| | |||||||||||||| || ||| || Sbjct 78175 TCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCCTCGAGCTGCTTTCCGGCGAAA 78116 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TTGAGCTG 133588 ||||| ||||||||||| || ||||| ||||||||||| ||| ||||||| |||| | Sbjct 78115 ATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCT-TGAACTTTTGCCTTGATGTT 78057 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 |||| || ||| | | ||||| |||| |||| || ||||| ||||||||||| || Sbjct 78056 TTCAATGGTATCGTTTGCTTCCACCTCGAGTGTGATAGTCTTGCCAGTCAGAGTTTTGAC 77997 Query 133649 GAAAATCTGCATG 133661 ||| ||||||||| Sbjct 77996 GAAGATCTGCATG 77984 Score = 141 bits (156), Expect = 9e-29 Identities = 150/195 (77%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 133470 TCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 |||||||| || ||||| || || |||| | |||||||||||||| || ||| || Sbjct 77947 TCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCCTCGAGCTGCTTTCCGGCGAAA 77888 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTTGAGCTG 133588 ||||| ||||||||||| || ||||| ||||||||||| ||| |||||| ||||| | Sbjct 77887 ATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTC-TTGAACTTTTGCCTTGATGTT 77829 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 |||| || ||| | | ||||| || | ||||| ||| || || |||| |||||| || Sbjct 77828 TTCAATGGTATCGTTTGCTTCCACCTCAAGGGTGATGGTCTTACCAGTCAAAGTTTTGAC 77769 Query 133649 GAAAATCTGCATGGC 133663 ||| |||||||| || Sbjct 77768 GAAGATCTGCATAGC 77754 >seq243 Length=69200 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 148824 ATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCG 148883 || || || |||||||| ||||| ||| || |||| | || || ||||| || | | Sbjct 22412 ATCGACGCGAGATTGCAGACGGCAACCTCGTCAGGGGATGTATATTCGACGATTTCAGTG 22353 Query 148884 CACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCG 148943 ||||| ||||| || |||||| ||||| ||||| |||||| ||| || || ||| Sbjct 22352 CACAGGTTGCTACACTTGATCGTGCCCAAATTCTTCTGATTGGACTTTTCATTACATGCG 22293 Query 148944 TCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTG 148981 ||||| || ||||||||||| || ||||| | ||| Sbjct 22292 TCCTTATAAAGCATGTACGGGGTACCGGTTTCTATCTG 22255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483416612367320