Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq243 179 9e-40 >seq243 Length=69200 Score = 179 bits (198), Expect = 9e-40 Identities = 335/484 (69%), Gaps = 15/484 (3%) Strand=Plus/Plus Query 110681 TGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG 110740 ||| |||||||||||| | | || ||||| || || ||| |||||| | |||||||| Sbjct 21876 TGGGCTTGTTCCAATGCTTCGTGTTTTCAATGATACGGCACGATATGTTGACCAAGGTGG 21935 Query 110741 T---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGA 110797 | || ||||| || ||||||| |||||| | ||||| |||||| ||||||| || || Sbjct 21936 TGGCAAAAGAAAAGGTGCATTTGCAATCTATGTAGAACCCTGGCATGCAGATATTTTCGA 21995 Query 110798 ATTCTTAGAACTTC-GTAAAAATCAAGGATTTGAAGAACAAA---GAGCACGTGATTTAT 110853 ||| | || | ||| | ||| ||||| ||| | || |||||| | | Sbjct 21996 ATTTCTCACGCTCAAGCGAAACACCGGGA----AAGAAGAAATGCGCGCTCGTGATCTCT 22051 Query 110854 TTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGT 110913 |||||| | | |||||| ||||||| || ||||| ||||| ||| || || | ||| Sbjct 22052 TTTATGGACTCTGGATTCCAGATTTGTTTATGAAGCGTGTGCAAAAATCAGGGAACTGGA 22111 Query 110914 CTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAG 110973 | ||| | ||| || | |||| || || |||| |||||| ||||||||||| Sbjct 22112 CACTTTTCGACCCTAATATTGCTCCAGGCCTCGCTGACTGCTATGGAGAAGAGTTTGAAA 22171 Query 110974 ACCTTTACGAAAAATATGAAAAAGAAGGCA-AGTTTCGCAAACAAATTCCAGCTCAAGAA 111032 | | ||||| |||||||| ||||||| | || |||| | | | || ||||| Sbjct 22172 AATTATACGAGCAATATGAACGTGAAGGCAGGGGAACGAAAAC-AGTCACGGCGCAAGAG 22230 Query 111033 CTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAA 111092 || |||||| ||||| | || || || | ||||| || || || || || | ||||| Sbjct 22231 CTCTGGTTCCAAATCATCGAGTCCCAGATAGAAACCGGTACCCCGTACATGCTTTATAAG 22290 Query 111093 GA-TCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTT 111151 || ||| |||| || || ||||| | |||||| || || || |||| ||| || | Sbjct 22291 GACGCAT-GTAATGAAAAGTCCAATCAGAAGAATTTGGGCACGATCAAGTGTAGCAACCT 22349 Query 111152 GTGC 111155 |||| Sbjct 22350 GTGC 22353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186802262214973