Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2 113 3e-20 >seq2 Length=132159 Score = 113 bits (124), Expect = 3e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||||| ||||| || |||||||| || || || ||||| | || || | || Sbjct 77959 TGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCCTCGAGCTGC 77900 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 |||||||| ||||| | |||||||| ||| | || | ||||| ||||| || ||| Sbjct 77899 TTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAACTTT- 77841 Query 33667 TGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || | | | ||| ||| ||| ||| |||||| |||| ||||| || ||||| || Sbjct 77840 TGCCTTGATGTTTTCAATGGTATCGTTTGCTTCCACCTCAAGGGTGATGGTCTTACCAGT 77781 Query 33726 TAACGTTTTTACAAAGATCTGCATAG 33751 || ||||| || ||||||||||||| Sbjct 77780 CAAAGTTTTGACGAAGATCTGCATAG 77755 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||||| ||||| || |||||||| || || || ||||| | || || | || Sbjct 78187 TGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCCTCGAGCTGC 78128 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 |||||||| ||||| | |||||||| ||| | || | ||||| ||||| || ||| Sbjct 78127 TTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAACTTT- 78069 Query 33667 TGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || | | | ||| ||| ||| ||| |||||| || | ||||| || || || || Sbjct 78068 TGCCTTGATGTTTTCAATGGTATCGTTTGCTTCCACCTCGAGTGTGATAGTCTTGCCAGT 78009 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | ||||| || ||||||||||| Sbjct 78008 CAGAGTTTTGACGAAGATCTGCAT 77985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701223786560