Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 seq243 84.2 2e-11 >seq2 Length=132159 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131933 TCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAG 131992 ||||| |||||||||||||| || || ||| ||| |||||||| || |||| | Sbjct 78175 TCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCCTCGAGCTGCTTTCCGGCGAAA 78116 Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGT 132052 || || ||||| || ||||| || || ||||| || || || |||| || | | | Sbjct 78115 ATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAACTTTTGCCTTGATGTTT 78056 Query 132053 TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATG 132112 || | |||||| | | ||||| |||| || | || || |||||||||||||| | | Sbjct 78055 TCAATGGTATCGTTTGCTTCCACCTCGAGTGTGATAGTCTTGCCAGTCAGAGTTTTGACG 77996 Query 132113 AAAATCTGCATG 132124 || ||||||||| Sbjct 77995 AAGATCTGCATG 77984 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 131933 TCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAG 131992 ||||| |||||||||||||| || || ||| ||| |||||||| || |||| | Sbjct 77947 TCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCCTCGAGCTGCTTTCCGGCGAAA 77888 Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGT 132052 || || ||||| || ||||| || || ||||| || || || |||| || | | | Sbjct 77887 ATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAACTTTTGCCTTGATGTTT 77828 Query 132053 TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATG 132112 || | |||||| | | ||||| || | || | || |||||||||| |||||| | | Sbjct 77827 TCAATGGTATCGTTTGCTTCCACCTCAAGGGTGATGGTCTTACCAGTCAAAGTTTTGACG 77768 Query 132113 AAAATCTGCAT 132123 || |||||||| Sbjct 77767 AAGATCTGCAT 77757 >seq243 Length=69200 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 147463 ATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCG 147522 || ||||| |||||||||||||| ||| || | | | || | |||||||| | | Sbjct 22412 ATCGACGCGAGATTGCAGACGGCAACCTCGTCAGGGGATGTATATTCGACGATTTCAGTG 22353 Query 147523 CACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG--CTTTTCCGATTGCACG 147580 ||||||||||| || || || |||||||| | ||||||| |||||| ||| || | Sbjct 22352 CACAGGTTGCTACACTTGATCGTGCCCAAATTCTTCTGATTGGACTTTTC--ATTACATG 22295 Query 147581 CGTCTTTGAAGAGCATGTACGG 147602 |||| || | ||||||||||| Sbjct 22294 CGTCCTTATAAAGCATGTACGG 22273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476607071355480