Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq531 168 1e-35 seq171 168 1e-35 seq254 113 6e-19 seq439 87.8 3e-11 >seq531 Length=50098 Score = 168 bits (186), Expect = 1e-35 Identities = 398/585 (68%), Gaps = 22/585 (4%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| |||| | || ||||||||| | | ||| ||||| || ||| || | | | Sbjct 47121 GAGCCAATGCTTCAAGAAAACCCGAACAGATATGTTCTGTTTCCAATCGAGTATC--CCG 47178 Query 1455776 ATATG-GGAA-ATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 |||| |||| | ||| || ||| | ||||| || |||||||| | || || || ||| Sbjct 47179 ATATTTGGAAGAAATACAAAGAAG-CAGAGGCTTCGTTTTGGACAGTTGAAGAAGTAGAC 47237 Query 1455834 CTCGGCGCCGACACGGTCCAC--TGGGT-GTC--GCTGAGCGACGACGAGCGCCATTTCA 1455888 || | | | | | | | |||| | | ||| | |||||||||||| || |||| Sbjct 47238 CTTTCC--CAAGATGTTAAAGAATGGGAAGACAAGCTTAACGACGACGAGCGTCACTTCA 47295 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 |||||||||| || || ||||| ||| || ||||| || || ||||| || || Sbjct 47296 TCAAGCACGTTCTGGCATTTTT-CGCAGCATCTGATGGAATAGTCCTTGAGAATCTTGCG 47354 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | ||||| ||||| || | || | | || | |||| ||||| || ||||| ||| Sbjct 47355 GCACGCTTCATGAACGACATTCAGATCGCTGAAGTTCGTTGCTTTTATGGTTTCCAAATC 47414 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || ||||| || ||||| || | || || ||||||||||||| || ||||| || Sbjct 47415 GCGATTGAAAATATTCACTCGGAGATGTATTCCATCCTGATCGACACGTATATCAAGAAC 47474 Query 1456069 CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128 | | || |||| ||||| ||| || || || | |||| || | | ||| Sbjct 47475 CAAGCAGATAAGGCAAGGCTCTTCAACGCTATGGAGACTATTCCGTGTGTTCAGCAGAAG 47534 Query 1456129 GCCGACTGGGCGATGAAGTGGATCAA-CAAGGAGGGCCTCGACACTTTGCCGAGCGGCTC 1456187 || | ||||| || || ||||| || || | | |||| || ||||| | || Sbjct 47535 GCTCAATGGGCAATTAAATGGATTAATTCAGCA--GACTCG----TTCGCCGAAAGACTT 47588 Query 1456188 GTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGG 1456246 ||||| || || || || ||||| ||||| ||| || |||||||| || || || ||| Sbjct 47589 GTCGGGTTCGCAGCTGTGGAGGGAATCTTCTTCAGTGGAAGTTTCTGTGCAATTTTCTGG 47648 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGA 1456291 ||||||||||| || | ||||| ||| || ||| || ||||| Sbjct 47649 CTCAAGAAGCGAGGATTAATGCCAGGT-TTAACCTTCAGTAACGA 47692 Score = 125 bits (138), Expect = 1e-22 Identities = 236/335 (70%), Gaps = 19/335 (6%) Strand=Plus/Plus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACA--CGATGCTCG-TCAACAAGCCGTC- 1456503 || |||||||||||||| || ||||| | |||| | || | ||||||| ||| Sbjct 47712 GGGTTGCACTGTGACTTCGCTTGTCTCTTATACAGCTCACACTTGAAGAACAAGCTGTCA 47771 Query 1456504 ---GACCGACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGT 1456560 |||||| | || || |||||| |||||||||| | |||||| |||||||||| Sbjct 47772 CAGGACCGA---GTACATTCA-ATCATCCACGAGGCCGTCAAAATCGAGCAAGAGTTTGT 47827 Query 1456561 CAGCGAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACA 1456620 | ||| |||| || ||| |||||||| ||||||| || || ||| |||||||| Sbjct 47828 GACCGATGCGCTTCCCGTGCGACTCATCGGGATGAACG-CAGATCTTATGAACCAGTACA 47886 Query 1456621 TTGAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGAC 1456680 |||| || || |||||| || ||| || | || ||||| | ||||||| ||| | Sbjct 47887 TTGAGTTCTG-CGCCGATCGTCTGATCACCGCACTCGGGT-ATGAGAAGCGGTAC--AAA 47942 Query 1456681 GGC--CAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTC 1456738 | | |||||||| | ||||| |||| || ||| |||| ||||| ||||| || Sbjct 47943 GTCAAAAACCCGTTTGACTTTATGGAAATGATTTCTCTCCAGGGAAAGACAAACTTCTTT 48002 Query 1456739 GAGCGCCGCGT-GGCGAGTACGCCAAGGCCGGCGT 1456772 ||| ||||| || || || ||||||||||| Sbjct 48003 GAGAAGCGCGTCGGTGACTATCAGAAGGCCGGCGT 48037 >seq171 Length=86538 Score = 168 bits (186), Expect = 1e-35 Identities = 398/585 (68%), Gaps = 22/585 (4%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| |||| | || ||||||||| | | ||| ||||| || ||| || | | | Sbjct 4135 GAGCCAATGCTTCAAGAAAACCCGAACAGATATGTTCTGTTTCCAATCGAGTATC--CCG 4192 Query 1455776 ATATG-GGAA-ATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 |||| |||| | ||| || ||| | ||||| || |||||||| | || || || ||| Sbjct 4193 ATATTTGGAAGAAATACAAAGAAG-CAGAGGCTTCGTTTTGGACAGTTGAAGAAGTAGAC 4251 Query 1455834 CTCGGCGCCGACACGGTCCAC--TGGGT-GTC--GCTGAGCGACGACGAGCGCCATTTCA 1455888 || | | | | | | | |||| | | ||| | |||||||||||| || |||| Sbjct 4252 CTTTCC--CAAGATGTTAAAGAATGGGAAGACAAGCTTAACGACGACGAGCGTCACTTCA 4309 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 |||||||||| || || ||||| ||| || ||||| || || ||||| || || Sbjct 4310 TCAAGCACGTTCTGGCATTTTT-CGCAGCATCTGATGGAATAGTCCTTGAGAATCTTGCG 4368 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | ||||| ||||| || | || | | || | |||| ||||| || ||||| ||| Sbjct 4369 GCACGCTTCATGAACGACATTCAGATCGCTGAAGTTCGTTGCTTTTATGGTTTCCAAATC 4428 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || ||||| || ||||| || | || || ||||||||||||| || ||||| || Sbjct 4429 GCGATTGAAAATATTCACTCGGAGATGTATTCCATCCTGATCGACACGTATATCAAGAAC 4488 Query 1456069 CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128 | | || |||| ||||| ||| || || || | |||| || | | ||| Sbjct 4489 CAAGCAGATAAGGCAAGGCTCTTCAACGCTATGGAGACTATTCCGTGTGTTCAGCAGAAG 4548 Query 1456129 GCCGACTGGGCGATGAAGTGGATCAA-CAAGGAGGGCCTCGACACTTTGCCGAGCGGCTC 1456187 || | ||||| || || ||||| || || | | |||| || ||||| | || Sbjct 4549 GCTCAGTGGGCAATTAAATGGATTAATTCAGCA--GACTCG----TTCGCCGAAAGACTT 4602 Query 1456188 GTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGG 1456246 ||||| || || || || ||||| ||||| ||| || |||||||| || || || ||| Sbjct 4603 GTCGGGTTCGCAGCTGTGGAGGGAATCTTCTTCAGTGGAAGTTTCTGTGCAATTTTCTGG 4662 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGA 1456291 ||||||||||| || | ||||| ||| || ||| || ||||| Sbjct 4663 CTCAAGAAGCGAGGATTAATGCCAGGT-TTAACCTTCAGTAACGA 4706 Score = 125 bits (138), Expect = 1e-22 Identities = 236/335 (70%), Gaps = 19/335 (6%) Strand=Plus/Plus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACA--CGATGCTCG-TCAACAAGCCGTC- 1456503 || |||||||||||||| || ||||| | |||| | || | ||||||| ||| Sbjct 4726 GGGTTGCACTGTGACTTCGCTTGTCTCTTATACAGCTCACACTTGAAGAACAAGCTGTCA 4785 Query 1456504 ---GACCGACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGT 1456560 |||||| | || || |||||| |||||||||| | |||||| |||||||||| Sbjct 4786 CAGGACCGA---GTACATTCA-ATCATCCACGAGGCCGTCAAAATCGAGCAAGAGTTTGT 4841 Query 1456561 CAGCGAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACA 1456620 | ||| |||| || ||| |||||||| ||||||| || || ||| |||||||| Sbjct 4842 GACCGATGCGCTTCCCGTGCGACTCATCGGGATGAACG-CAGATCTTATGAACCAGTACA 4900 Query 1456621 TTGAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGAC 1456680 |||| || || |||||| || ||| || | || ||||| | ||||||| ||| | Sbjct 4901 TTGAGTTCTG-CGCCGATCGTCTGATCACCGCACTCGGGT-ATGAGAAGCGGTAC--AAA 4956 Query 1456681 GGC--CAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTC 1456738 | | |||||||| | ||||| |||| || ||| |||| ||||| ||||| || Sbjct 4957 GTCAAAAACCCGTTTGACTTTATGGAAATGATTTCTCTCCAGGGAAAGACAAACTTCTTT 5016 Query 1456739 GAGCGCCGCGT-GGCGAGTACGCCAAGGCCGGCGT 1456772 ||| ||||| || || || ||||||||||| Sbjct 5017 GAGAAGCGCGTCGGTGACTATCAGAAGGCCGGCGT 5051 >seq254 Length=68440 Score = 113 bits (124), Expect = 6e-19 Identities = 196/278 (71%), Gaps = 8/278 (3%) Strand=Plus/Minus Query 259908 TGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGT 259967 ||||||| ||||| |||||||||| ||||||||||| || ||||||||| || | Sbjct 32607 TGTTCACACATGCGACCCCCACGCTCTACAATGCCGGCACCCCACGCCCGCAG-ATGAGC 32549 Query 259968 CG-TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAG 260026 | ||||| ||| ||| | || | ||||||||||| || || || || ||||||||| Sbjct 32548 AGTTGCTTCCTGCTGGCGCTCAAAGATGATTCGATCGAAGGTATTTACGATACGCTCAAG 32489 Query 260027 CAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGC 260086 || ||||||||||| ||| || ||||| || || | ||||| | || Sbjct 32488 ACATGTGCGCTCATCTCGAAGAACAGTGGTGGCATTGGCTTGCATGTTCACAACATTCGA 32429 Query 260087 GCCGCGGGCGCCTAC-GTGGCGGGCACCAA--CGGCCAGTCCAACGGCCTTGTGCCCATG 260143 | | || |||| | ||||| || || || |||| || || | || |||||| Sbjct 32428 AGCTCTGGAAGCTACATTCGCGGG-ACAAATGGGGTCAGT--AATGGAATAGTCCCCATG 32372 Query 260144 CTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 || || || || |||||||| || |||||||||||||| Sbjct 32371 CTGCGAGTCTTCAACGACACTGCCCGCTACGTCGACCA 32334 >seq439 Length=146363 Score = 87.8 bits (96), Expect = 3e-11 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 724970 CATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGG 725029 |||| | ||||| || || ||||||||||| |||| || ||| | ||||||| Sbjct 92356 CATGGCAGTCATGTCATCCTTCGTCAACGACATCTTCGAGCGACTCGCCGTTGAGGCCGC 92297 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 |||| ||||| ||||||| | | ||||| |||||||||||||||| ||||| Sbjct 92296 CTCCCTGACGCGCCACAACAAGGCCCAGACGATGTCGTCGCGCGAGATCCAGACTGCCGT 92237 Query 725090 GCGCCTGATCA-TGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||||| ||| | | ||| || || || | ||||||| | ||||||| || Sbjct 92236 CCGCCTG-TCACTCCCCGGTGAGCTCGCGAAGCACGCCATGGCCGAGGGAAC 92186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177744358876266