Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20
2015-08-05] 693 sequences; 9,477,801 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq2 111 1e-19
>seq2
Length=132159
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | || || || | || | || || || || ||||||||||| || | |
Sbjct 77983 CCACCACGCAGCCGCAGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGAC 77924
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || ||| | || || |||||||| || || || || | ||||||||||| | ||
Sbjct 77923 AGCGTGCGCCCATCCTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGG 77864
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688
| | ||||||| | ||| |||||| ||| | || | | || ||| | | ||||||
Sbjct 77863 ATTCCTTCCTTGT-CTTGAACTTTTGCCTTGATGTTTTCAATGGTATCGTTTGCTTCCAC 77805
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||| | ||||| || ||||| ||||||||||| || || ||||||||
Sbjct 77804 CTCAAGGGTGATGGTCTTACCAGTCAAAGTTTTGACGAAGATCTGCAT 77757
Score = 98.7 bits (108), Expect = 9e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599
|| || || || ||||||||||| || | || || ||| | || || |||||||| ||
Sbjct 78181 GTGCTTTCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCCTCGAGCTGCTTTCCG 78122
Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTT 35658
|| || || | ||||||||||| | || | | ||||||| | ||| |||||| |||
Sbjct 78121 GCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGT-CTTGAACTTTTGCCTT 78063
Query 35659 CAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718
| || | | || ||| | | ||||||||| | ||||| || || || |||| |||
Sbjct 78062 GATGTTTTCAATGGTATCGTTTGCTTCCACCTCGAGTGTGATAGTCTTGCCAGTCAGAGT 78003
Query 35719 TTTCACAAATATCTGCAT 35736
||| || || ||||||||
Sbjct 78002 TTTGACGAAGATCTGCAT 77985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450789695000440
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |