Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2 122 9e-23 seq243 95.1 1e-14 >seq2 Length=132159 Score = 122 bits (134), Expect = 9e-23 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || |||| |||||||| || ||| ||| || |||||||||||||| | || | ||| | Sbjct 77974 AGCCGCAGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGACAGC-GTGCG 77916 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || |||||||| || || || ||||| | |||||||| || || || || ||||| Sbjct 77915 CCCATCCTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCTTC 77856 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAG 134673 || ||||||| |||| |||| | | |||| || ||| | |||||| || || | Sbjct 77855 CTTGTCTTGAACTTTTGCCTTGA-TGTTTTCAATGGTATCGTTTGCTTCCACCTCAAGGG 77797 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| ||||| || |||||||| ||||| || ||||| Sbjct 77796 TGATGGTCTTACCAGTCAAAGTTTTGACGAAGATCTGCAT 77757 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||||| || || | |||||||| || ||| ||| || |||||||||||||| | | Sbjct 78211 CCTCCTCGCAGCCGAAGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGAC 78152 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | ||| | || |||||||| || || || ||||| | |||||||| || || || Sbjct 78151 AGC-GTGCGCCCATCCTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGG 78093 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCA 134664 || ||||| || ||||||| |||| |||| | | |||| || ||| | ||||| Sbjct 78092 GATTCCTTCCTTGTCTTGAACTTTTGCCTTGA-TGTTTTCAATGGTATCGTTTGCTTCCA 78034 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| || || || || || || | |||||| ||||| || ||||| Sbjct 78033 CCTCGAGTGTGATAGTCTTGCCAGTCAGAGTTTTGACGAAGATCTGCAT 77985 >seq243 Length=69200 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/170 (73%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 8236 ATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAAC 8295 || ||||| | || | |||||||||| ||||||||||| || || ||||| || || Sbjct 22243 ATCATCGAGTCCCAGATAGAAACCGGTACCCCGTACATGCTTTATAAGGACGCATGTAAT 22302 Query 8296 GCCAAAAG--CAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAA 8353 | ||||| |||||| | || ||||||| || || ||||| |||||| |||||| Sbjct 22303 G--AAAAGTCCAATCAGAAGAATTTGGGCACGATCAAGTGTAGCAACCTGTGCACTGAAA 22360 Query 8354 TTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCG 8403 | || | || | | || ||||| || ||||| |||||||| |||||| Sbjct 22361 TCGTCGAATATACATCCCCTGACGAGGTTGCCGTCTGCAATCTCGCGTCG 22410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505394021986360