Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq531 192 8e-44 seq171 192 8e-44 seq512 96.9 5e-15 seq254 93.3 6e-14 >seq531 Length=50098 Score = 192 bits (212), Expect = 8e-44 Identities = 418/617 (68%), Gaps = 9/617 (1%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || ||||||||||| || | |||||||| | ||| | |||||| || || | Sbjct 47734 CAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAAA 47675 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 || ||||||| || ||||| |||||||| || || ||| ||| |||| |||||| Sbjct 47674 CCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAAG 47615 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTA-T 39795 || || || || ||||| || | |||||||| || || ||| || | | | || | Sbjct 47614 ATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCG-AACGAGTCTGCTGAATTAAT 47556 Query 39796 CCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 ||| || |||||| | ||| |||| || ||||| || || || || ||||| || || Sbjct 47555 CCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTGAA 47496 Query 39856 GAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTC 39915 ||| || || | | || | ||| || || || | | |||||| || Sbjct 47495 GAGCCTTGCCTTATCTGCTTGGTTCTTGATATACGTGTCGATCAGGATGGAATACATCTC 47436 Query 39916 TGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTG 39975 || || || ||||||||||| || || || || ||||| || | |||||| || || Sbjct 47435 CGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGATCTG 47376 Query 39976 TACCTCTGAACAA-AATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAA 40034 | || | || || | | |||| | ||| ||| |||||||||||| || || | Sbjct 47375 AATGTC-GTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTGCGA 47317 Query 40035 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA---TTTATTCC-AG 40090 ||||||||| || || || || || | || ||| || || | | |||| | Sbjct 47316 AAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTC-GTTAAGCTTGTCTTCCCAT 47258 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || || | ||||| || | |||||||||||| ||||||||||||| |||||||| | | Sbjct 47257 TCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCTTCT 47198 Query 40151 TTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTT 40210 ||||| | ||||| ||||| |||| | |||||||| | |||| |||| || || ||| Sbjct 47197 TTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGGGTTT 47138 Query 40211 TTTGCAAGGATGGGTTC 40227 | | ||| || || || Sbjct 47137 TCTTGAAGCATTGGCTC 47121 >seq171 Length=86538 Score = 192 bits (212), Expect = 8e-44 Identities = 418/617 (68%), Gaps = 9/617 (1%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || ||||||||||| || | |||||||| | ||| | |||||| || || | Sbjct 4748 CAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAAA 4689 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 || ||||||| || ||||| |||||||| || || ||| ||| |||| |||||| Sbjct 4688 CCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAAG 4629 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTA-T 39795 || || || || ||||| || | |||||||| || || ||| || | | | || | Sbjct 4628 ATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCG-AACGAGTCTGCTGAATTAAT 4570 Query 39796 CCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 ||| || |||||| | ||| |||| || ||||| || || || || ||||| || || Sbjct 4569 CCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTGAA 4510 Query 39856 GAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTC 39915 ||| || || | | || | ||| || || || | | |||||| || Sbjct 4509 GAGCCTTGCCTTATCTGCTTGGTTCTTGATATACGTGTCGATCAGGATGGAATACATCTC 4450 Query 39916 TGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTG 39975 || || || ||||||||||| || || || || ||||| || | |||||| || || Sbjct 4449 CGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGATCTG 4390 Query 39976 TACCTCTGAACAA-AATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAA 40034 | || | || || | | |||| | ||| ||| |||||||||||| || || | Sbjct 4389 AATGTC-GTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTGCGA 4331 Query 40035 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA---TTTATTCC-AG 40090 ||||||||| || || || || || | || ||| || || | | |||| | Sbjct 4330 AAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTC-GTTAAGCTTGTCTTCCCAT 4272 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || || | ||||| || | |||||||||||| ||||||||||||| |||||||| | | Sbjct 4271 TCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCTTCT 4212 Query 40151 TTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTT 40210 ||||| | ||||| ||||| |||| | |||||||| | |||| |||| || || ||| Sbjct 4211 TTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGGGTTT 4152 Query 40211 TTTGCAAGGATGGGTTC 40227 | | ||| || || || Sbjct 4151 TCTTGAAGCATTGGCTC 4135 >seq512 Length=1106 Score = 96.9 bits (106), Expect = 5e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 ||| || || | ||||| || | |||||||||||| |||||||||| || |||||||| Sbjct 1088 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAATGAAGCCTCTGC 1029 Query 40147 CTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGG 40206 | |||||| | ||||| ||||| |||| | |||||||| | |||| |||| || || Sbjct 1028 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGG 969 Query 40207 ATTTTTTGCAAGGATGGGTTC 40227 |||| | ||| || || || Sbjct 968 GTTTTCTTGAAGCATTGGCTC 948 >seq254 Length=68440 Score = 93.3 bits (102), Expect = 6e-14 Identities = 342/529 (65%), Gaps = 10/529 (2%) Strand=Plus/Plus Query 69322 ATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTT 69381 || ||||| || || ||||| |||||||| || || || |||||||| || ||| Sbjct 31899 ATGATCTCCGTGCACAGATTTGAGCATTTGATGGTTCCAAGGTTTTGCTGGTTCGACTTG 31958 Query 69382 TTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATA 69441 ||| || || || ||||| || | | |||| || || || || ||||| | ||| || Sbjct 31959 CGGTTGCATGCATCTTTGTATAGCAAATACGGCGTTCCCGTCTCGATCTGCGCTTCAATG 32018 Query 69442 ATAGATTTCCAAACGACCCTA-GCATTTATTACGGTCTTGTAACGCTTCT---CTTTTTC 69497 || | ||| | || | | || | || |||||||| | || | | || || Sbjct 32019 ATGGCGAACCAGA-GATCTTGTGCGTCCATC---GTCTTGTACCCTTTATTATCCTTCTC 32074 Query 69498 ATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTC 69557 || || ||| || | ||||||||| | ||||| ||| | | ||||| | Sbjct 32075 GTACTGCTCATAGAGACTCTCGAATTCAGCGCCCCAGCAATCGGCGAGCCCAGGGGCTGT 32134 Query 69558 ATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGG 69617 || ||| | | || ||| | | || ||||| ||||| || || ||||| Sbjct 32135 TTTGGGATCGAAAAGTGTCCATTTGGCCTTTCGCTGCACTCGCTTCATGAAGAGGTCGGG 32194 Query 69618 AATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttttttt 69677 ||||| ||| | ||||| ||||| | | | | || || || || || || || || Sbjct 32195 GATCCAGAGACCGTAGAAGAGGTCTCTCGCCCGAATCTCCTCCTTGCCGGTGTTCTTCTT 32254 Query 69678 AAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCC 69737 || | | ||| ||||||||||||| ||||| || || || || || || | | || | Sbjct 32255 CAGGTTCAAAAAATCCATAATATCAGCGTGCCACGGCTCAAGGTAGATGGCAAAG-CTGC 32313 Query 69738 CGGT-CGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCA 69796 | | || || ||||| || || | ||| | |||||||| || |||||| ||||| Sbjct 32314 CTTTGCGCTTTCCACCTCCTTGGTCGACGTAGCGGGCAGTGTCGTTGAAGACTCGCAGCA 32373 Query 69797 TCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCC 69845 | || | || |||||| |||||||| || ||| || ||||| Sbjct 32374 TGGGGACTATTCCATTACTGACCCCATTTGTCCCGCGAATGTAGCTTCC 32422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686902849652520