Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq254 199 5e-46 >seq254 Length=68440 Score = 199 bits (220), Expect = 5e-46 Identities = 1121/1765 (64%), Gaps = 76/1765 (4%) Strand=Plus/Plus Query 110360 GATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAA 110419 || || |||||||| ||||| ||||| ||||| ||||||| |||| | ||||| || Sbjct 30969 GACCGCAGATAGTAGATCCCTGTCTTCAGTCCACGTTTCCAGCCGTAAAAGTGCATCGAT 31028 Query 110420 GAGAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATG 110479 | ||| |||| ||||||| || | ||| || |||| || || ||||||||||| Sbjct 31029 GTCAGCGTGGAGCTCGTTGGCGACTCGAGGAAAAGATTCAAGCTATGGCTTTGGTCAATA 31088 Query 110480 AAG--CGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTG 110537 || || || ||| ||||||||||| || | ||||| ||| |||||||| || | Sbjct 31089 TAGGCCGACCGCGT--CGCCGCCATATCGATAATGTCCTTTTGCTTGATTTCCCACACAG 31146 Query 110538 TGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCG 110597 | || || | | ||||| ||||| ||| | | || | || | | | || Sbjct 31147 TTCGGTATATCTCCTTGAGCTCATCGCGGAGACCCTCAATGTGTTGCACG---CTGCCGT 31203 Query 110598 CCTTCACCATGAGATCCTT------CATATCCTTGGACCAGAGACCAATCTTCTTGAGGT 110651 || | ||||| || | | || || ||| || || || | | | Sbjct 31204 TGTTGGCGATGAGTGTATTTCGGGACGTCTCATT---CCACAGGCCCTCCTGGATCAAAT 31260 Query 110652 CATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGA 110711 | |||| ||| | ||||| | |||||||| |||| || | ||| || | Sbjct 31261 CCCTGACAAGGCACCGATTGACGACTGGGAACTCACCACTGAGGACTCGGCGCAGATACA 31320 Query 110712 TGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTG 110771 |||| | |||||||| |||||||| || || || ||||| ||||| ||| ||| | Sbjct 31321 TGTTGCTCGTGTATGGCTCAAAGCACTCGTTGTTTCCCAATATTTGACTCGTGCTGGCAG 31380 Query 110772 TTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGA 110831 | ||||| ||||||| | ||||| || || | || | || | ||||||| ||| | Sbjct 31381 TCGGCATAGGTGCCACAAGGAGACTATTTCGGACGCCATGCTTCATGATGCGGGACTTCA 31440 Query 110832 GAACATCCCAGTCGTA---GTTGAGCTT-GGTTTCACCTTCCCACATGTCAAACTGAAGC 110887 | ||||||| | | ||| || ||| | ||||||||||| |||| || Sbjct 31441 ATTCCGCCCAGTCCCATCGCCCGCTCTTCGGCGTCA-CGTCCCACATGTCGTACTGGAGG 31499 Query 110888 ACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA---GCC 110944 | || | | | | ||| |||| | |||||||| | || | | ||| || Sbjct 31500 ATTCCCTTGCTCACTGGACTTCCCTGGTACGTTTCATACGGGCCAT---CCTCACTCGCG 31556 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 | |||||| ||||||| | ||| || ||||||||||| || | || || Sbjct 31557 ATGAGACAGCTTTCCTCCAGCGCGGCGAAGTAGATGGTTTCAAATATGTCTTCGTTGATG 31616 Query 111005 TCCTTGGCTT-----CATCTGAATCAAATGCGTAGCGGCACAAAATAA---ATACATCCG 111056 |||||| | | ||||| |||||| || | | | | ||||| | Sbjct 31617 CGCTTGGCCTTGGCGCTCGTGAATGGAATGCGGAG--------ATTGAGGTAGACATCGG 31668 Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTT--TCGCGCAGT 111114 | || || || || || | || || |||| || ||||| || ||| ||| || Sbjct 31669 CAAGTCCCTGCACCCCAAGGCCGATGGGTCGATGCCGCATGTT--GCTTCGTCGGGCCTC 31726 Query 111115 CTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 111174 || || || ||||| || | ||| ||||| | || || ||| | || | || | Sbjct 31727 TTCCACTGGGTAAAAGTTGCGGTCGATGACGAGATTGAGGTTTCTCGTTGCGATGCGTAC 31786 Query 111175 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAG---TCTCTTCATTGACATACTTTGG 111231 |||| |||| || ||||| || | || || | ||||| |||| ||||||| Sbjct 31787 GATTCTGCGAAGCTTCTCATAGTCCA---TGTCAGTTTTGTCTTCGTTGAGGAACTTTGG 31843 Query 111232 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 111291 || |||| || || | ||||| || || |||||| | |||||||| | || Sbjct 31844 GAGCGCGAGGGAGGCGAGGTTGCACACGGCGACTTCATCCGGTGCGGTGTACTCGATGAT 31903 Query 111292 TTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT 111351 || || || | || || | || || || || | || | ||||| ||| ||| Sbjct 31904 CTCCGTGCACAGATTTGAGCATTTGATGGTTCCAAGGTTTTGCTGGTTCGACTTGCGGTT 31963 Query 111352 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGC 111411 ||| ||||| ||||| |||| || ||||| |||||||| |||| | || | || || Sbjct 31964 GCATGCATCTTTGTATAGCAAATACGGCGTTCCCGTCTCGATCTGCGCTTCAATGATGGC 32023 Query 111412 CTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGT--CCCTCCGCCTCGTACTTT 111469 ||| | ||| || || || | | | ||| | ||| |||||||| Sbjct 32024 GAACCAGAGATCTTGTGC--GTCCATCGTCTTGTACCCTTTATTATCCTTCTCGTACTGC 32081 Query 111470 GTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGG 111528 ||||| || || || | ||| | || |||| ||| || || || | | || Sbjct 32082 TCATAGAGACTCTCGAATTCAGCGCCC-CAGCAATCGGCGAGCCCAGGGGCTGTTTTGGG 32140 Query 111529 ACAGAAAAGAGACCATTGACCACCTTC-CTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587 | |||||| | ||||| | | ||| || || ||||||||||| ||||| || |||| Sbjct 32141 ATCGAAAAGTGTCCATTTGGC-CTTTCGCTGCACTCGCTTCATGAAGAGGTCGGGGATCC 32199 Query 111588 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA-- 111645 | || | ||||| ||||| |||| ||| || | || ||| || | | Sbjct 32200 AGAGACCGTAGAAGAGGTCTCTCGCCCGAATCTCCTCCTTGCCGGTGTT-CTTCTTCAGG 32258 Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 111705 |||| || ||||| ||||| |||||||| |||||||| |||| || | || | |||| Sbjct 32259 TTCAA-AAAATCCATAATATCAGCGTGCCACGGCTCAAGGTAGA-TGGCAAAGCTGCCTT 32316 Query 111706 T-CG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 111761 | || | || |||| | || ||||| || ||| |||| || || || ||||| | Sbjct 32317 TGCGCTTTCCACCTCCTTGGTCGACGTAGCGGGCAGTGTCGTTGAAGACTCGCAGCATGG 32376 Query 111762 GAATAATACCAT--CTGATTGACCATTTGTCCCCCGAATACGAGATT-TATTGGCTCTCA 111818 | | || |||| |||| ||||||||||| ||||| || || | | || | Sbjct 32377 GGACTATTCCATTACTGA--CCCCATTTGTCCCGCGAAT-GTAGCTTCCAGAGCTTCGAA 32433 Query 111819 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 111878 | || | |||| ||||| || ||| ||| ||||| ||||||| | | | Sbjct 32434 TGTTGTGAACATGCAAGCCAATGCCACCACTGTTCTTCGAGATGAGCGCACATGTCTTGA 32493 Query 111879 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 111938 | || | || ||||| | ||| || || || ||| || | |||||||||||| || Sbjct 32494 GCGTATCGTAAATACCTTCGATCGAATCATCTTTGAGCGCCAGCAGGAAGCAACTGCTCA 32553 Query 111939 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT 111998 ||||||| | ||| || || |||||| |||| || || || || || ||||||| || | Sbjct 32554 TCTGCGGGCGTGGGGTGCCGGCATTGTAGAGCGTGGGGGTCGCATGTGTGAACATTCCCT 32613 Query 111999 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTG 112058 | || | | || || ||||| || || | || | ||| || |||| | Sbjct 32614 GCGAGAGATACTCATACGTCTCGAAAACCCGTGGTAGGTTTGTGGAGTGAATTCCGAGGG 32673 Query 112059 CGACCCGCATGAACATGTACTGTGG 112083 |||| ||||||| |||||||||||| Sbjct 32674 CGACGCGCATGAGCATGTACTGTGG 32698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026559672800