Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq254 223 4e-53 seq243 120 4e-22 >seq254 Length=68440 Score = 223 bits (246), Expect = 4e-53 Identities = 1113/1753 (63%), Gaps = 50/1753 (3%) Strand=Plus/Plus Query 117834 GATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAG 117893 || || || ||||| ||||| ||||| || || | |||||| | || | ||||| || Sbjct 30969 GACCGCAGATAGTAGATCCCTGTCTTCAGTCCACGTTTCCAGCCGTAAAAGTGCATCGAT 31028 Query 117894 GACAACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATG 117953 | || | ||||| ||||| || | ||| || |||| || ||| ||| || || Sbjct 31029 GTCAGCGTGGAGCTCGTTGGCGACTCGAGGAAAAGATTCAAGCTATGGCTTTGGTCAATA 31088 Query 117954 AAG--CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAG 118011 || || || || |||||||||||| || | ||||| ||||||||||||||||| Sbjct 31089 TAGGCCGACCGCGT--CGCCGCCATATCGATAATGTCCTTTTGCTTGATTTCCCACACAG 31146 Query 118012 TCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCG 118071 | | ||| | | ||| | ||||| ||| | || | || | ||| | | | || Sbjct 31147 TTCGGTATATCTCCTTGAGCTCATCGCGGAGACCCTCAATGTGTTGCACG---CTGCCGT 31203 Query 118072 CCTTGACCATGAGA-TCCTTCATATCCTTTGA--CCAGAGACCAATCTTTTTGAGATCCT 118128 ||| | ||||| | ||| | | | | ||| || || || | | |||| Sbjct 31204 TGTTGGCGATGAGTGTATTTCGGGACGTCTCATTCCACAGGCCCTCCTGGATCAAATCCC 31263 Query 118129 CCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATAT 118188 || || | |||||| || |||||||| |||| || | |||||| || | Sbjct 31264 TGACAAGGCACCGATTGACGACTGGGAACTCACCACTGAGGACTCGGCGCAGATACATGT 31323 Query 118189 TGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGG 118248 || |||||||||||||||||||||| ||||| ||||| ||||| ||| ||| || | Sbjct 31324 TGCTCGTGTATGGCTCAAAGCACTCGTTGTTTCCCAATATTTGACTCGTGCTGGCAGTCG 31383 Query 118249 GCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAG 118308 |||| ||||||| || || || || |||| || | | | | ||||| ||| | Sbjct 31384 GCATAGGTGCCACAAGGAGACTATTTCGGACGCCATGCTTCATGATGCGGGACTTCAATT 31443 Query 118309 CGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATAC 118365 | ||||||| | | ||| | | | | | |||||| || |||||||||| | Sbjct 31444 CCGCCCAGTCCCATCGCCCGCTCTTCGGCGTCACGTCCCACATGTCGTACTGGAGGATTC 31503 Query 118366 CTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGG 118425 | | | | |||| ||||| | || ||||| ||||| || | ||| | Sbjct 31504 CCTTGCTCACTGGACTTCCCTGGTACGTTTCATACGGGCCATCCTCACTCGCGATGAGAC 31563 Query 118426 AGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGG 118485 |||| |||| || || ||| || || |||||||| ||| | || || ||||| Sbjct 31564 AGCTTTCCTCCAGCGCGGCGAAGTAGATGGTTTCAAATATGTCTTCGTTGATGCGCTTGG 31623 Query 118486 CCTCGTCG-----GAATCAAACGC-GAGTCGGCACAAAATAAATACATCCGCGAGACCTT 118539 ||| | || |||| || || ||| | | | ||||| || || || | Sbjct 31624 CCTTGGCGCTCGTGAATGGAATGCGGAGATTG------AGGTAGACATCGGCAAGTCCCT 31677 Query 118540 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTC--CGAGCGGTCTCCACGGG 118597 | || || ||||| || || ||||| | ||| || |||| || || ||||| || Sbjct 31678 GCACCCCAAGGCCGATGGGTCGATGCCGCATGTT--GCTTCGTCGGGCCTCTTCCACTGG 31735 Query 118598 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 118657 ||||| || | ||||| || ||| || ||| | || | | | |||| | Sbjct 31736 GTAAAAGTTGCGGTCGATGACGAGATTGAGGTTTCTCGTTGCGATGCGTACGATTCTGCG 31795 Query 118658 AAGCTTTTCGTAATCAAAACTGCGAG---TCTCTTCATTGACATACTTAGGAAGGGCGAT 118714 |||||| || || || | || || | ||||| |||| |||| || || |||| Sbjct 31796 AAGCTTCTCATAGTCCA---TGTCAGTTTTGTCTTCGTTGAGGAACTTTGGGAGCGCGAG 31852 Query 118715 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCA 118774 || || || || ||||| | | |||||| | |||||||| || || |||||||| Sbjct 31853 GGAGGCGAGGTTGCACACGGCGACTTCATCCGGTGCGGTGTACTCGATGATCTCCGTGCA 31912 Query 118775 CAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 118834 || ||||| | || ||||| || | ||| | || || ||||| ||| || ||||| Sbjct 31913 CAGATTTGAGCATTTGATGGTTCCAAGGTTTTGCTGGTTCGACTTGCGGTTGCATGCATC 31972 Query 118835 CTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGAC 118894 ||||| |||| || ||||| |||||||| | || | | | || || ||||| Sbjct 31973 TTTGTATAGCAAATACGGCGTTCCCGTCTCGATCTGCGCTTCAATGATGGCGAACCAGAG 32032 Query 118895 ATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGC 118954 ||| || || || || || || | |||||||| ||||| Sbjct 32033 ATCTTGTGCGTCCATCGTCTTGTACCCTTTATTATCCTTCTCGTACTGCTCATAGAGACT 32092 Query 118955 TTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGA 119014 || || || | ||| | || | |||||| || || | | || ||| || | Sbjct 32093 CTCGAATTCAGCGCCCCAGCAATCGGCGAGCCCAGGGGCTGTTTTGGGATCGAAAAGTGT 32152 Query 119015 CCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGA 119073 ||| ||| || | || || ||||||||||||||||| ||||||||||| | ||| Sbjct 32153 CCATTTGGCCTTTC-GCTGCACTCGCTTCATGAAGAGGTCGGGGATCCAGAGACCGTAGA 32211 Query 119074 AGAGATCCCGACAGCG-AGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 119132 |||| || | || | || || | | || || || || | |||||| ||| Sbjct 32212 AGAGGTCTCTCGCCCGAATCTCCTCCTTGCCGGTG-TTCTTCTTCAGGTTCAAAAAATCC 32270 Query 119133 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCA 119189 || ||||| ||||||||||| || ||||| | || | || || || | ||| Sbjct 32271 ATAATATCAGCGTGCCACGGCTCAAGGTAGATGGCAAAGCTGCCTTTGCGCTTTCCACCT 32330 Query 119190 GCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCAT-- 119247 | |||| || || | |||||| |||| || || || ||||| || | || |||| Sbjct 32331 CCTTGGTCGACGTAGCGGGCAGTGTCGTTGAAGACTCGCAGCATGGGGACTATTCCATTA 32390 Query 119248 CGGATTGGCCATTTGTCCCCCGAATACGAGACTT--ATTGGCTCTGACATCGTGGATGTG 119305 | || ||||||||||| ||||| | ||| | | || | | ||| | || Sbjct 32391 CTGA--CCCCATTTGTCCCGCGAAT--GTAGCTTCCAGAGCTTCGAATGTTGTGAACATG 32446 Query 119306 CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGAT 119365 || ||||| || || ||| ||||| |||| || | |||| | |||| || Sbjct 32447 CAAGCCAATGCCACCACTGTTCTTCGAGATGAGCGCACATGTCTTGAGCGTATCGTAAAT 32506 Query 119366 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGG 119425 || |||||||| ||| | || || | |||||||| || ||| || || | || Sbjct 32507 ACCTTCGATCGAATCATCTTTGAGCGCCAGCAGGAAGCAACTGCTCATCTGCGGGCGTGG 32566 Query 119426 TGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTC 119485 || || || ||| |||| || || ||||| || ||||||| || || || | | || Sbjct 32567 GGTGCCGGCATTGTAGAGCGTGGGGGTCGCATGTGTGAACATTCCCTGCGAGAGATACTC 32626 Query 119486 GTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAA 119545 || ||||| || || || | || | |||||| |||| | ||| ||||| | Sbjct 32627 ATACGTCTCGAAAACCCGTGGTAGGTTTGTGGAGTGAATTCCGAGGGCGACGCGCATGAG 32686 Query 119546 CATGTATTGGGGT 119558 |||||| || ||| Sbjct 32687 CATGTACTGTGGT 32699 >seq243 Length=69200 Score = 120 bits (132), Expect = 4e-22 Identities = 567/889 (64%), Gaps = 29/889 (3%) Strand=Plus/Minus Query 118692 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 118751 |||||| || | ||||||| || ||||| ||||| || || | ||| || Sbjct 22433 TTGACAAACATCGGAAGGGAAATCGACGCGAGATTGCAGACGGCAACCTCGTCAGGGGAT 22374 Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 || || || | ||||| ||||||| ||| || ||| || |||||||| ||||| ||| Sbjct 22373 GTATATTCGACGATTTCAGTGCACAGGTTGCTACACTTGATCGTGCCCAAATTCTTCTGA 22314 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || |||||| ||||| || ||||| ||||||||||| || || || || || | ||| Sbjct 22313 TTGGACTTTTCATTACATGCGTCCTTATAAAGCATGTACGGGGTACCGGTTTCTATCTGG 22254 Query 118872 GACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGC-GTTGGCTCGCCCCT- 118929 |||| || || ||||| || || || | ||| | ||| | ||||| Sbjct 22253 GACTCGATGATTTGGAACCAGA-----GC-TCTTGCGCCGTGACTGTTTTCGTTCCCCTG 22200 Query 118930 -CTTC---CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 118985 |||| || || | ||| | |||||||||||| || | || | ||| Sbjct 22199 CCTTCACGTTCATATTGCTCGTATAATTTTTCAAACTCTTCTCCATAGCAGTCAGCGAGG 22140 Query 118986 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045 ||||| || ||| ||| ||| || | ||| | || | | || |||||||| Sbjct 22139 CCTGGAGCAATATTAGGGTCGAAAAGTGTCCAGTTCCCTGATTTTTGCACACGCTTCATA 22080 Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTC-ATCCCC 119104 || | ||||| |||||||| | | |||||||| ||| ||| |||||| |||| Sbjct 22079 AACAAATCTGGAATCCAGAGTCCATAAAAGAGATCACGAGCGCGCATTTCTTCTTTCCCG 22020 Query 119105 CTGATTGAGACGC---AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 119161 || || ||| | | | ||| || | ||||| || ||||| ||||| | || Sbjct 22019 GTGTTT----CGCTTGAGCGTGAGAAATTCGAAAATATCTGCATGCCAGGGTTCTACATA 21964 Query 119162 CACCGCGATTGACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTT 119218 | || | || || || | | |||| | |||| ||||| | || || | || Sbjct 21963 GATTGCAAATGCACCTTTTCTTTTGCCACCACCTTGGTCAACATATCGTGCCGTATCATT 21904 Query 119219 AAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGA 119278 || |||||||||||||||| | |||| | ||||| || || || | | Sbjct 21903 GAAAACACGAAGCATTGGAACAAGCCCATTGCTCGTTCCATTGGTTCCAGCGAT--GTAA 21846 Query 119279 CTT--ATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATT 119336 ||| | || | || ||||| | ||| | || || || || ||| | || ||| Sbjct 21845 CTTCCACATGCGCGGATGTCGTGCACGTGTAGGCCGATTCCTCCGGCCGATTTGCTGATA 21786 Query 119337 TGCGCGCA-CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGAT 119395 |||| || | || || || || | || || || ||||| |||| | || || Sbjct 21785 AGCGCACATGTTCG-CAGTGTGTCGAATATTCCTGGTATAGAGTCTTCCTTGGTCGCAAT 21727 Query 119396 GAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGC 119455 | ||| ||||| ||| ||||| | || ||||| || || || || ||||||||||| Sbjct 21726 TAAGAAACAGCTACTCATCTGAGGTTTCGGAGTACCTGCATTAAACAGCGTTGGTGTCGC 21667 Query 119456 GTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTC 119515 ||| | ||| |||| ||| | | | |||| | || || || || || Sbjct 21666 GTGCGTAAACCATCCTTCGGAGAGCAATTTGTAGCTTTCTTTCACTGCTTCAAAATCAGG 21607 Query 119516 CCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCC 119564 |||| || ||||||| ||||||| || ||||||||| ||| | ||| Sbjct 21606 TGCGTGGATTCCGATCGCAACCCGCAAAAGCATGTATTGAGGTCTCTCC 21558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429842805080