Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq254 188 8e-43 seq531 105 8e-18 seq171 105 8e-18 seq243 93.3 5e-14 >seq254 Length=68440 Score = 188 bits (208), Expect = 8e-43 Identities = 1118/1761 (63%), Gaps = 66/1761 (4%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||||||||| |||||||||| ||| |||| ||||| | || | || Sbjct 32698 CCACAGTACATGCTCATGCGCGTCGCCCTCGGAATTCACTCCACAAACCTACCACGGGTT 32639 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 || ||||| || || | | || || || ||||||| || || || || || |||| | Sbjct 32638 TTCGAGACGTATGAGTATCTCTCGCAGGGAATGTTCACACATGCGACCCCCACGCTCTAC 32579 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 ||||| || || ||| | || || ||| |||||||||||| | || ||| || || Sbjct 32578 AATGCCGGCACCCCACGCCCGCAGATGAGCAGTTGCTTCCTGCTGGCGCTCAAAGATGAT 32519 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || ||| | ||||| || | || || | | ||||||| ||||| ||| ||| Sbjct 32518 TCGATCGAAGGTATTTACGATACGCTCAAGACATGTGCGCTCATCTCGAAGAACAGTGGT 32459 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATA-AATCTCGTATTCGGGGGACAAA 104520 || ||||| |||| | || | | || | | || || ||||| |||||||| Sbjct 32458 GGCATTGGCTTGCATGTTCACAACATTCGAAGCTCTGGAAGCTAC-ATTCGCGGGACAAA 32400 Query 104521 TGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 ||| |||| |||| || | || ||||| || || || |||| ||| || ||||| Sbjct 32399 TGGGG--TCAGTAATGGAATAGTCCCCATGCTGCGAGTCTTCAACGACACTGCCCGCTAC 32342 Query 104579 GTAAATCAAGCTGGGCGT---CG-AAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 || | |||| || | || ||||| | || | || |||| |||||||| ||||| Sbjct 32341 GTCGACCAAGGAGGTGGAAAGCGCAAAGGCAGCTTTGCCA-TCTACCTTGAGCCGTGGCA 32283 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 ||| ||||| ||||| || | | || ||| || | |||||| ||| Sbjct 32282 CGCTGATATTATGGATTTTTTGAACCTGAAGAAGAACACCGGCAAGGAGGAGATTCGGGC 32223 Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG-GAGA 104753 | || ||||||| || ||||||||| || || |||||||||||| |||| || || | Sbjct 32222 GAGAGACCTCTTCTACGGTCTCTGGATCCCCGACCTCTTCATGAAGCGAGTGCAGCGAAA 32163 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 | | ||| ||| | || || ||| | | || ||||| ||| ||||| | ||| | Sbjct 32162 G-GCCAAATGGACACTTTTCGATCCCAAAACAGCCCCTGGGCTCGCCGATTGCTGGGGCG 32104 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGC 104873 || || || || || |||||||| | || | | | |||| || Sbjct 32103 CTGAATTCGAGAGTCTCTATGAGCAGTACGAGAAGGATAATAAAGGGTACAAGACGATGG 32044 Query 104874 CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933 || ||| | ||| || || | | | || | |||||| || || || || Sbjct 32043 ACGCACAAGATCTCTGGTTCGCCATCATTGAAGCGCAGATCGAGACGGGAACGCCGTATT 31984 Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 104993 |||| |||||||| || || |||| ||| || || | || | || ||||| Sbjct 31983 TGCTATACAAAGATGCATGCAACCGCAAGTCGAACCAGCAAAACCTTGGAACCATCAAAT 31924 Query 104994 GTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 105053 | || ||||| || || || ||| | || | || | ||||| || ||||| | Sbjct 31923 GCTCAAATCTGTGCACGGAGATCATCGAGTACACCGCACCGGATGAAGTCGCCGTGTGCA 31864 Query 105054 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAA---GACATTTGATT 105110 ||||||| || |||| ||||| |||| | | | ||||||| ||||| || | Sbjct 31863 ACCTCGCCTCCCTCGCGCTCCCAAAGTTCCTCAA--CGAAGACAAAACTGACATG-GACT 31807 Query 105111 ATGAAAAACTCCACGAAGT--TACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 |||| || || | | | | |||| | | || | |||||| || || || || Sbjct 31806 ATGAGAAGCTTCGCAGAATCGTACGCATC--GCAACGAGAAACCTCAATCTCGTCATCGA 31749 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 | || |||||||| || || || || | || ||| | || || || || || Sbjct 31748 CCGCAACTTTTACCCAGTGGAAGAGGCCCGACGAAGCAACATGCGGCATCGACCCATCGG 31689 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTC--- 105285 || || || ||||| || || ||||| | | | | | || |||||| |||| Sbjct 31688 CCTTGGGGTGCAGGGACTTGCCGATGTCTACCT-CAATCTC----CGCATTCCATTCACG 31634 Query 105286 --CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343 || | | || ||| ||||| | ||||||||| ||||| || |||||| || Sbjct 31633 AGCGCCAAGGCCAAGCGCATCAACGAAGACATATTTGAAACCATCTACTTCGCCGCGCTG 31574 Query 105344 GAGGCGAGTTCAGAGTTGGCAGAG-GTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402 |||| || | | || ||| | ||||| || |||||||| | |||| ||| Sbjct 31573 GAGGAAAGCTGTCTCATCGC-GAGTGAGGATGGCCCGTATGAAACGTACCAGGGAAGTCC 31515 Query 105403 AGCTTCACAAGGGG-TGCTTCAATTTGATATGTGGGAAGGTGAGACCAA---GCTT-CAC 105457 || | |||||| | || || | || |||||||| | ||| || | || | Sbjct 31514 AG-TGAGCAAGGGAATCCTCCAGTACGACATGTGGGACG-TGACGCCGAAGAGCGGGCGA 31457 Query 105458 TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTC 105517 | ||||||| | | ||| ||||||| | || | || | || || |||||||| Sbjct 31456 TGGGACTGGGCGGAATTGAAGTCCCGCATCATGAAGCATGGCGTCCGAAATAGTCTCCTT 31397 Query 105518 ATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 105577 |||| || ||||| || ||| ||| ||||| ||||| || || || |||||||| Sbjct 31396 GTGGCACCTATGCCGACTGCCAGCACGAGTCAAATATTGGGAAACAACGAGTGCTTTGAG 31337 Query 105578 CCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 105637 || ||||||| ||||| |||||| | || |||| || ||||| | ||||| Sbjct 31336 CCATACACGAGCAACATGTATCTGCGCCGAGTCCTCAGTGGTGAGTTCCCAGTCGTCAAT 31277 Query 105638 AAGCATCTCGT---GGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATG------ 105688 | || || |||| || | ||| || || ||| || || | | Sbjct 31276 CGGTGCCTTGTCAGGGATTTGATCCAGGAG---GGCCTGTGG---AATGAGACGTCCCGA 31223 Query 105689 AAGGATCTCATGGTGAA-AGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGA 105747 || ||||| | || | ||| | | | ||| | |||| || | | | |||| Sbjct 31222 AATACACTCATCGCCAACAACGGCAG----CGTGCAACACATTGAGGGTCTCCGCGATGA 31167 Query 105748 AATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGC 105807 | ||| || | ||||| || || |||||||||||| ||||| | || || ||||| Sbjct 31166 GCTCAAGGAGATATACCGAACTGTGTGGGAAATCAAGCAAAAGGACATTATCGATATGGC 31107 Query 105808 CGCAGATCGTGGTCG--CTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGT 105865 || || || ||||| || ||||| ||||| || || ||||||| ||| | || Sbjct 31106 GGC-GA-CGCGGTCGGCCTATATTGACCAAAGCCATAGCTTGAATCTTTTCCTCGAGTCG 31049 Query 105866 CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACG 105925 ||||||| |||| ||| | || |||||| | ||| | ||||| || || || || Sbjct 31048 CCAACGAGCTCCACGCTGACATCGATGCACTTTTACGGCTGGAAACGTGGACTGAAGACA 30989 Query 105926 GGGATGTATTACCTCCGATCT 105946 ||||| || || || || ||| Sbjct 30988 GGGATCTACTATCTGCGGTCT 30968 >seq531 Length=50098 Score = 105 bits (116), Expect = 8e-18 Identities = 187/269 (70%), Gaps = 9/269 (3%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCA--GCTCTTTGAAGCCATCC 94729 || || |||| |||||| ||| | || || ||| ||| |||||| | || || Sbjct 47451 CTGATCGACACGTATATCAAGAACCAAGCAGATAAG--GCAAGGCTCTTCAACGCTATGG 47508 Query 94730 AAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAA-AG 94788 | || |||||||| |||| |||| || | ||||| || || ||| || || || || Sbjct 47509 AGACTATTCCGTGTGTTCAGCAGAAGGCTCAATGGGCAATTAAATGGATTAATTCAGCAG 47568 Query 94789 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848 | ||||| || || |||| ||| || || ||| ||||| ||||||||| | Sbjct 47569 ACTCGTTC----GCCGAAAGACTTGTCGGGTTCGCAGCTGTGGAGGGAATCTTCTTCAGT 47624 Query 94849 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908 || ||||| || |||| ||||||||||||||||| | ||||||||| | |||| Sbjct 47625 GGAAGTTTCTGTGCAATTTTCTGGCTCAAGAAGCGAGGATTAATGCCAGGTTTAACCTTC 47684 Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||| || || ||||| ||||| Sbjct 47685 AGTAACGAGCTCATTTCCCGTGATGAGGG 47713 >seq171 Length=86538 Score = 105 bits (116), Expect = 8e-18 Identities = 187/269 (70%), Gaps = 9/269 (3%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCA--GCTCTTTGAAGCCATCC 94729 || || |||| |||||| ||| | || || ||| ||| |||||| | || || Sbjct 4465 CTGATCGACACGTATATCAAGAACCAAGCAGATAAG--GCAAGGCTCTTCAACGCTATGG 4522 Query 94730 AAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAA-AG 94788 | || |||||||| |||| |||| || | ||||| || || ||| || || || || Sbjct 4523 AGACTATTCCGTGTGTTCAGCAGAAGGCTCAGTGGGCAATTAAATGGATTAATTCAGCAG 4582 Query 94789 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848 | ||||| || || |||| ||| || || ||| ||||| ||||||||| | Sbjct 4583 ACTCGTTC----GCCGAAAGACTTGTCGGGTTCGCAGCTGTGGAGGGAATCTTCTTCAGT 4638 Query 94849 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908 || ||||| || |||| ||||||||||||||||| | ||||||||| | |||| Sbjct 4639 GGAAGTTTCTGTGCAATTTTCTGGCTCAAGAAGCGAGGATTAATGCCAGGTTTAACCTTC 4698 Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||| || || ||||| ||||| Sbjct 4699 AGTAACGAGCTCATTTCCCGTGATGAGGG 4727 >seq243 Length=69200 Score = 93.3 bits (102), Expect = 5e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 104901 TCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAA 104960 || |||| || | || || ||||| || ||||||||||| || ||||| ||||| ||| Sbjct 22247 TCGAGTCCCAGATAGAAACCGGTACCCCGTACATGCTTTATAAGGACGCATGTAATGAAA 22306 Query 104961 AGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGG 105020 || ||||| ||||||||||| ||||||| || ||| || || || |||||| | | Sbjct 22307 AGTCCAATCAGAAGAATTTGGGCACGATCAAGTGTAGCAACCTGTGCACTGAAATCGTCG 22366 Query 105021 AATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGT 105080 ||| |||| | || ||| || || || || ||||| || || | || || | || Sbjct 22367 AATATACATCCCCTGACGAGGTTGCCGTCTGCAATCTCGCGTCGATTTCCCTTCCGATGT 22426 Query 105081 ATGT 105084 ||| Sbjct 22427 TTGT 22430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255747503320