Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq166 230 7e-55 seq616 114 4e-20 >seq166 Length=88622 Score = 230 bits (254), Expect = 7e-55 Identities = 943/1469 (64%), Gaps = 21/1469 (1%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| ||||||||| | || || || || || || || | || |||||||| || ||| Sbjct 21834 GCTATCGGAATCGATCTCGGCACGACCTACTCGTGCGTCGGCGTCTGGCAAAACGAGCGT 21893 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || | || || ||||||| ||||| || || || ||||||||||| || || || Sbjct 21894 GTCGTTATTATCCCAAATGACCAAGGAAATTACACGACACCATCATACGTGGCCTTCACT 21953 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| | || |||||||| || || ||||| | || || |||| || Sbjct 21954 GACACCGAGCGTCTTATCGGTGATTCAGCCAAGAATCAGGTCGCGATGAACCCAACCAAC 22013 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || || || || || |||||||| ||||| | | | || |||| || | Sbjct 22014 ACCGTGTTCGACGCCAAGCGACTGATTGGGCGCAAAGTCTCAGACACCGTCGTGCAGGCC 22073 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | || || | || || | || | | | || || || || | || ||| Sbjct 22074 GACATGAAGCACTGGCCATTCAAAGTCAAGCACACCGGCGACGACAAGCCCGTCATCGAG 22133 Query 349499 GTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 | || || ||||| ||||| || ||| ||||| || ||| ||||||||||| Sbjct 22134 GCCACCTACAAGGGTGACACAAAGAC-ATTCACTCCCGAGGAGATTAGCTCAATGGTTTT 22192 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 |||| ||||||||||| || || | || || || | ||| | | || ||| | Sbjct 22193 GATTAAGATGAAGGAAATCGCCGAGTCCTACTTGGGCAAGGAAGTGAAGAAGGCCGTTGT 22252 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 ||||| || || || || || || | ||||| |||||||| || || || ||| Sbjct 22253 GACTGTTCCTGCGTACTTCAACGACTCGCAGCGCCAGGCAACAAAGGACGCCGGATCCAT 22312 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 || || | | ||| | | || || ||||| || || ||||| || || || ||||| Sbjct 22313 CGCAGGCCTCGAAGTTTTGCGCATCATCAATGAGCCAACCGCTGCCGCCATCGCCTATGG 22372 Query 349738 GCTTGATAAAATGAGTGAC---CAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || || || | | ||| || || |||| || || ||| | || ||||| Sbjct 22373 ACTCGACAAGGTTAACGACACTGTTGAGCGTAACGTTCTCATCTTCGATCTTGGCGGTGG 22432 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || || || | || || || | || | ||||| ||||| || ||||| ||||| Sbjct 22433 TACCTTCGACGTCACCCTTCTCACCATCGACGGTGGAATCTTTGAGGTGAAAGCCACTGC 22492 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 || ||||| ||||| || ||||| || ||||| || || ||||| || || || | Sbjct 22493 CGGAGATACCCATCTCGGCGGAGAGGACTTTGACAACCGACTCGTCAACCACTTCATTGA 22552 Query 349915 AGAATTTAAGCGTCAAGC-TAAAATTGATAT---TGGAGATAATCCTAGAGCAATGCGTC 349970 || || ||||| |||| || | || || |||| || | | || | || | Sbjct 22553 TGAGTTCAAGCG-AAAGCACAAGAAGGACATCTCTGGA---AACCAGCGCGCCCTCCGCC 22608 Query 349971 GCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTA 350030 | || | || || |||||| | ||||| || | || || || | | ||||| || | Sbjct 22609 GACTCCGCACCGCCTGTGAAAGGGCTAAACGCACATTGTCGTCCGCCGCTCAAACTTCCA 22668 Query 350031 TTGAAATTGATTCTCTTGCT-GATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGG 350089 | ||||| ||||| |||| | || |||| || || | | || || ||||| || Sbjct 22669 TCGAAATCGATTC-CTTGTTCGAAGGCATCGACTTTTACACGAGCATCACCCGTGCACGA 22727 Query 350090 TTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTA 350149 || || || | || |||||||| | |||| || | || || || | || | Sbjct 22728 TTCGAGGAGCTCTGCGCTGATCTTTTCCGCTCAACCTTGAAGCCAGTCGAGCAGGTGCTC 22787 Query 350150 AAAGATGCAAAAATGTCCAA-AAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTAC 350208 | || || || ||| ||| ||| || | || || || || || || || || || Sbjct 22788 ACCGACGCCAAGATGGACAAGCGATC-CATCCACGACGTTGTCTTGGTCGGCGGATCAAC 22846 Query 350209 ACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCT-TCTA 350267 ||||| ||||| || ||| | | ||| | || ||||||||||| | | | Sbjct 22847 CCGTATCCCAAAGGTGCAATCCCTTGTCAGTGATTACTTCGGTGGCAAAGAACTTAACAA 22906 Query 350268 GATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTAT 350327 || | || || || || || || ||||| || || || ||||| ||||| | |||| | Sbjct 22907 GAGC-ATCAACCCCGACGAGGCGGTTGCGTACGGCGCGGCTGTCCAGGCCTATATTCTCA 22965 Query 350328 CTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGC 350387 | || ||||| | | ||| | ||| | || || || || | ||||| | Sbjct 22966 CAGGCGGAAAGAGCAAGCAGACTGAGGGTCTTCTCCTCCTCGACGTCGCACCACTCACAT 23025 Query 350388 TTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTAC 350447 | || | ||||| |||||| || ||||| | ||| || |||| | || | | Sbjct 23026 TGGGCATTGAAACGGCTGGTGGCGTGATGACCGCTCTCATCAAGCGAAACACAACAATCC 23085 Query 350448 CTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTC 350507 | || || ||| ||| || || || || | ||||| ||||||| || | || | Sbjct 23086 CCACCAAGAAGAGCCAGACCTTCTCGACCTACAGCGATAACCAGCCAGGTGTGAACATCC 23145 Query 350508 AAGTATTTGAAGGTGAACG-TGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACC 350566 | || || || ||||| || || | || ||||| || || ||| | ||| Sbjct 23146 AGGTCTTCGAGGGTGAGCGAAGCATG-ACGAAAGACTGCCATTCGCTCGGAAACTTTGAT 23204 Query 350567 CTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATT 350626 || | | ||||| || ||| | ||||| || ||||| |||||| | ||||||||| Sbjct 23205 CTTGGGGGCATTCCCCCGGCGCCCCGTGGAGTGCCACAGATCGAAGTCACCTTCGATATT 23264 Query 350627 GATTCAAATGGTATTTTAAATGTTACCGC 350655 || | ||||||||||| || || | ||| Sbjct 23265 GACGCCAATGGTATTTTGAACGTCAGCGC 23293 >seq616 Length=134167 Score = 114 bits (126), Expect = 4e-20 Identities = 190/275 (69%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || ||||| || || ||||| ||||| | ||||| || || ||| ||| Sbjct 110110 ACTGTCCCTGCCTACTTCAACGATGCGCAGCGCCAGTCCACAAAGGACGCCGGCGCCATC 110169 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || ||| ||||||| |||| ||||| || || || || || || || || |||||| Sbjct 110170 GCTGGGCTAAATGTCGCGCGAATCATTAACGAGCCGACAGCCGCCGCCATCGCGTATGGG 110229 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 || || || | | || | || ||||| |||| || || |||||||| || Sbjct 110230 CTCGACAAGAAAGGCGAGCGC------AACATTCTCGTTTTCGACTTGGGTGGTGGCACG 110283 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || || | || || ||| |||| || || | || || ||| Sbjct 110284 TTCGATGTTTCTCTGCTCACCATCGATGATGGATTTTTCGAGGTGATCGCCACCAACGGT 110343 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCG 349893 || || |||||||||||||| |||||||| || || Sbjct 110344 GACACGCATCTTGGTGGAGAGGATTTTGACAACCG 110378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515240945961479