Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq254 170 2e-37 seq531 114 1e-20 seq171 109 6e-19 >seq254 Length=68440 Score = 170 bits (188), Expect = 2e-37 Identities = 300/429 (70%), Gaps = 6/429 (1%) Strand=Plus/Minus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || || || || || || || || | ||| || || || | ||| |||||| || Sbjct 32605 TTCACACATGCGACCCCCACGCTCTACAATGCCGGCACCCCACGCCCGCAGATGAGCAGT 32546 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 ||||||||| ||||| | || ||||| |||||||| || || ||||| ||||||||| Sbjct 32545 TGCTTCCTGCTGGCGCTCAAAGATGATTCGATCGAAGGTATTTACGATACGCTCAAGACA 32486 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCG-AACGTCCGTGC 53451 ||||| | |||||| ||| ||||| || || | || || || ||| | || Sbjct 32485 TGTGCGCTCATCTCGAAGAACAGTGGTGGCATTGGCTTGCA-TGTTCACAACATTCGAAG 32427 Query 53452 GAACGGCA-CACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCC 53510 || | | || || ||| || || || ||| ||||||| || || ||||| | Sbjct 32426 CTCTGGAAGCTACATTCGCGGG-ACAAATGGGGTCAGTAATGGAATAGTCCCCATGCTGC 32368 Query 53511 GCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGT 53570 | ||||||||| |||| ||||| |||||| |||| || ||||| |||||||| || | Sbjct 32367 GAGTCTTCAACGACACTGCCCGCTACGTCGACCAAGGAGGTGGAAAGCGCAAAGGCAGCT 32308 Query 53571 TCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGA 53630 | ||||||||||| |||||||||||||| || |||||||| ||| | | ||| || Sbjct 32307 TTGCCATCTACCTTGAGCCGTGGCACGCTGATATTATGGATTTTTTGAACCTGAAGAAGA 32248 Query 53631 ATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGAC 53689 | || | || ||||| || | ||||| || ||| | ||| ||||| || ||| Sbjct 32247 ACACCGGCAAGGAGGAGATTCGGGCGAGAGACCTCTTCTAC-GGTCTCTGGATCCCCGAC 32189 Query 53690 CTCTTCATG 53698 ||||||||| Sbjct 32188 CTCTTCATG 32180 >seq531 Length=50098 Score = 114 bits (126), Expect = 1e-20 Identities = 282/419 (67%), Gaps = 18/419 (4%) Strand=Plus/Minus Query 74808 CCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAG 74867 || ||||| | ||| |||||||| | ||| || || |||||||| |||||||||||| Sbjct 47674 CCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAAG 47615 Query 74868 ATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATC 74927 || || || ||| || || ||||||| | || ||||||| | | ||| | ||| Sbjct 47614 ATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGAATTAATC 47555 Query 74928 CAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAA 74986 || | ||||||| ||| ||| ||| | || || | ||| || || || | ||| Sbjct 47554 CATTTAATTGCCCATTGAGC-CTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTGAA 47496 Query 74987 GAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTC 75046 ||| |||||||| ||| | | | ||||| | |||| |||| | || ||| |||| Sbjct 47495 GAGCCTTGCCTTATCTGCTTGGTTCTTGATATACGTGTCGATCAGGATGGAATACATCTC 47436 Query 75047 CGAATGAATCGACTCGTTGAA---CGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAA 75102 ||| ||||| | | || || ||| ||| | | || || | || | || || | Sbjct 47435 CGAGTGAAT--ATT--TTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGA 47380 Query 75103 TCTGTACATCCTT--TGAAAAATTCATGTCG--ATATTCTCCATGACGATGCCGTCCGAG 75158 |||| | || || |||| | || || | |||||| | ||| || || || || Sbjct 47379 TCTGAATGTCGTTCATGAA----GCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGAT 47324 Query 75159 GCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTC 75217 || |||||||| ||||| || ||||| ||||| ||||| ||||| | || ||||| Sbjct 47323 GCTGCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTGTC 47265 >seq171 Length=86538 Score = 109 bits (120), Expect = 6e-19 Identities = 281/419 (67%), Gaps = 18/419 (4%) Strand=Plus/Minus Query 74808 CCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAG 74867 || ||||| | ||| |||||||| | ||| || || |||||||| |||||||||||| Sbjct 4688 CCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAAG 4629 Query 74868 ATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATC 74927 || || || ||| || || ||||||| | || ||||||| | | ||| | ||| Sbjct 4628 ATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGAATTAATC 4569 Query 74928 CAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAA 74986 || | ||||| | ||| ||| ||| | || || | ||| || || || | ||| Sbjct 4568 CATTTAATTGCCCACTGAGC-CTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTGAA 4510 Query 74987 GAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTC 75046 ||| |||||||| ||| | | | ||||| | |||| |||| | || ||| |||| Sbjct 4509 GAGCCTTGCCTTATCTGCTTGGTTCTTGATATACGTGTCGATCAGGATGGAATACATCTC 4450 Query 75047 CGAATGAATCGACTCGTTGAA---CGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAA 75102 ||| ||||| | | || || ||| ||| | | || || | || | || || | Sbjct 4449 CGAGTGAAT--ATT--TTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGA 4394 Query 75103 TCTGTACATCCTT--TGAAAAATTCATGTCG--ATATTCTCCATGACGATGCCGTCCGAG 75158 |||| | || || |||| | || || | |||||| | ||| || || || || Sbjct 4393 TCTGAATGTCGTTCATGAA----GCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGAT 4338 Query 75159 GCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTC 75217 || |||||||| ||||| || ||||| ||||| ||||| ||||| | || ||||| Sbjct 4337 GCTGCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTGTC 4279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547211259741400