Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 158 1e-33 seq243 129 7e-25 seq254 114 1e-20 seq324 82.4 9e-11 >seq2 Length=132159 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || | || || ||||| || || |||||||| || || Sbjct 77757 ATGCAGATCTTCGTCAAAACTTTGACTGGTAAGACCATCACCCTTGAGGTGGAAGCAAAC 77816 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||| ||| |||| |||||||| ||||| || ||||||||| Sbjct 77817 GATACCATTGAAAACATCAAGGCAAAAGTTCAAGACAAGGAAGGAATCCCACCAGACCAG 77876 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || ||||| |||||||||| || || || ||||||| || Sbjct 77877 CAGCGACTCATTTTCGCCGGAAAGCAGCTCGAGGATGGGCGCACGCTGTCAGACTACAAC 77936 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || ||| ||| ||||| || || |||| || || ||||| Sbjct 77937 ATTCAGAAAGAAAGCACCCTTCACCTCGTTCTGCGGCTGCGTGGTGG 77983 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || || ||||||||||| || || ||||| || || Sbjct 77985 ATGCAGATCTTCGTCAAAACTCTGACTGGCAAGACTATCACACTCGAGGTGGAAGCAAAC 78044 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||| ||| |||| |||||||| ||||| || ||||||||| Sbjct 78045 GATACCATTGAAAACATCAAGGCAAAAGTTCAAGACAAGGAAGGAATCCCACCAGACCAG 78104 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || ||||| |||||||||| || || || ||||||| || Sbjct 78105 CAGCGACTCATTTTCGCCGGAAAGCAGCTCGAGGATGGGCGCACGCTGTCAGACTACAAC 78164 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || ||| ||| ||||| || || | || || || || || Sbjct 78165 ATTCAGAAAGAAAGCACCCTTCACCTCGTTCTTCGGCTGCGAGGAGG 78211 >seq243 Length=69200 Score = 129 bits (142), Expect = 7e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 80883 CTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATC 80942 ||| ||||| ||||||| | ||||| |||||||| ||||| ||||| |||| Sbjct 22434 CTTGACAAACATCGGAAGGGAAATCGACGCGAGATTGCAGACGGCAACCTCGTCAGGGGA 22375 Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 |||| | ||||||||||| ||||||| || | |||| || || |||| || ||||| Sbjct 22374 TGTATATTCGACGATTTCAGTGCACAGGTTGCTACACTTGATCGTGCCCAAATTCTTCTG 22315 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 || ||||| | || || |||||||| || |||||||||||||||||| || | ||| Sbjct 22314 ATTGGACTTTTCATTACATGCGTCCTTATAAAGCATGTACGGGGTACCGGTTTCTATCTG 22255 Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGAC 81101 |||| || ||| | ||| | ||| ||||| |||| Sbjct 22254 GGACTCGATGATTTGGAACCAGAGCTCTTGCGCCGTGAC 22216 >seq254 Length=68440 Score = 114 bits (126), Expect = 1e-20 Identities = 479/745 (64%), Gaps = 32/745 (4%) Strand=Plus/Plus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415 ||||| || |||| || |||||||||| ||| | ||||| |||||||| |||| Sbjct 31290 AACTCACCACTGAGGACTCGGCGCAGATACATGTTGCTCGTGTATGGCTCAAAGCACTCG 31349 Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475 |||||||| | || ||| |||||| || |||||||| || | || | || ||| Sbjct 31350 TTGTTTCCCAATATTTGACTCGTGCTGGCAGTCGGCATAGGTGCCACAAGGAGACTATTT 31409 Query 80476 CGCAGGCCGTGCTTCTTGATATCCTCGCG----CAAATCTGACCAAAA--ATCAACCCCA 80529 || | ||| |||||| |||| || | ||| || | ||| ||| || | Sbjct 31410 CGGACGCCATGCTTCATGATG----CGGGACTTCAATTCCGCCCAGTCCCATCGCCCGCT 31465 Query 80530 A--CGCTGTGAC--CCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGC 80585 || || || |||||||||||| ||| | ||| |||| | | ||| ||| Sbjct 31466 CTTCGGCGTCACGTCCCACATGTCGTACTGGAGGATTCCCTTGCTCACTGGACTTCCCTG 31525 Query 80586 GAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTG 80645 | |||| || |||||||| ||| | || | ||| ||| || || ||| Sbjct 31526 GTACGTTTCATACGGGCCATCCTCACTCGCGATGAGACAGCTTTCCTCCAGCGCGGCGAA 31585 Query 80646 ATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGC---GCCTGTGGG-TCGTCGAACG 80701 || ||| ||||| | | | | ||| | |||| |||| | | |||| ||| | Sbjct 31586 GTAGATGGTTTCAAATATGTCTTCGTTGAT---GCGCTTGGCCTTGGCGCTCGT-GAATG 31641 Query 80702 ACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGT 80761 | || | | | | | || || || || ||||| || || | | |||| || || | Sbjct 31642 GAATGCGGAGATTGAGGTAGACATCGGCAAGTCCCTGCACCCCAAGGCCGATGGGTCGAT 31701 Query 80762 GGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGT 80821 | ||| |||| ||| |||||| | |||||||||||| ||||||||| | | Sbjct 31702 GCCGCATGTTGCTTCGTCGGGCCTCTTCCACTGGGTAAAAGTTGCGGTCGATGACGAGAT 31761 Query 80822 TCAGGTTGCGTGTAACAACCCGTGTAACATCATG--AAGTTTCTGAAAGTCGAATT--GG 80877 | ||||| | || | | ||| | || || ||| |||| | |||| | | | Sbjct 31762 TGAGGTTTCTCGTTGCGATGCGT--ACGATTCTGCGAAGCTTCTCATAGTCCATGTCAGT 31819 Query 80878 TTCCCCTTC----ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTC 80933 || |||| | || || || ||||| || || ||||||||||| || || Sbjct 31820 TTTGTCTTCGTTGAGGAACTTTGGGAGCGCGAGGGAGGCGAGGTTGCACACGGCGACTTC 31879 Query 80934 TTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAG 80993 || | | || |||||| ||| |||||||||| ||| || | || || || || || Sbjct 31880 ATCCGGTGCGGTGTACTCGATGATCTCCGTGCACAGATTTGAGCATTTGATGGTTCCAAG 31939 Query 80994 GTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGT 81053 ||||| |||||| |||||| |||||| || || ||||| || ||||| || || || Sbjct 31940 GTTTTGCTGGTTCGACTTGCGGTTGCATGCATCTTTGTATAGCAAATACGGCGTTCCCGT 31999 Query 81054 CTCGACCTGTGACTTGAGGATGGCG 81078 ||||| ||| | | | ||||||| Sbjct 32000 CTCGATCTGCGCTTCAATGATGGCG 32024 >seq324 Length=58793 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 30358 AAAATCTGGATCCCCGAACTCATTTTTGGGCACCTTTTGACAAGCTCCAACTACAACGAC 30417 ||||| ||| | || || || ||||| || |||| ||||| |||||||||||||||| Sbjct 15074 AAAATGTGGGTACCTGAGCTGATTTTCGGCAACCTCTTGACGTCCTCCAACTACAACGAC 15133 Query 30418 GAGGAGCAGCGCGTGACGGGTGGACGAAATGGCTACGGTGCAAAG 30462 ||||| || || ||||||||| | | ||||||||||| ||| Sbjct 15134 TCGGAGCGACGGGTCACGGGTGGATGTTACGGCTACGGTGCGAAG 15178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570305459686160